Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27978 | 3' | -57.2 | NC_005886.2 | + | 27732 | 0.66 | 0.578246 |
Target: 5'- cGCCCCGaguGUCG-CAGGGa-GUuugauGUCUGCc -3' miRNA: 3'- -UGGGGU---UAGCaGUCCCggCG-----UAGACG- -5' |
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27978 | 3' | -57.2 | NC_005886.2 | + | 27344 | 0.66 | 0.55652 |
Target: 5'- aGCCCCGcAUUGuUCAGGuGCga-GUCUGCa -3' miRNA: 3'- -UGGGGU-UAGC-AGUCC-CGgcgUAGACG- -5' |
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27978 | 3' | -57.2 | NC_005886.2 | + | 44338 | 0.66 | 0.55652 |
Target: 5'- cACUCCAAaCGaaaCGGGG-CGCAUCaUGCg -3' miRNA: 3'- -UGGGGUUaGCa--GUCCCgGCGUAG-ACG- -5' |
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27978 | 3' | -57.2 | NC_005886.2 | + | 20521 | 0.66 | 0.55652 |
Target: 5'- aAUCCCGcuaGUCaAGGGUgCGCcgCUGCa -3' miRNA: 3'- -UGGGGUuagCAG-UCCCG-GCGuaGACG- -5' |
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27978 | 3' | -57.2 | NC_005886.2 | + | 9461 | 0.68 | 0.442753 |
Target: 5'- gGCCCgAAUCGcUCGGccGGCCGCuugcucUUUGCc -3' miRNA: 3'- -UGGGgUUAGC-AGUC--CCGGCGu-----AGACG- -5' |
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27978 | 3' | -57.2 | NC_005886.2 | + | 36171 | 0.7 | 0.351646 |
Target: 5'- uUCCCAcgCGgcggCAcGGGCgGCAUCgGCg -3' miRNA: 3'- uGGGGUuaGCa---GU-CCCGgCGUAGaCG- -5' |
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27978 | 3' | -57.2 | NC_005886.2 | + | 24930 | 1.03 | 0.001414 |
Target: 5'- aACCCCAAUCGUCAGGGCCGC-UCUGCg -3' miRNA: 3'- -UGGGGUUAGCAGUCCCGGCGuAGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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