miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27979 5' -52.3 NC_005886.2 + 25138 0.66 0.84036
Target:  5'- -gCuuCGGGcgUGAUcgGAUCAgGCAUCGUg -3'
miRNA:   3'- aaGuuGCCC--ACUG--CUAGUgCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 40922 0.66 0.8218
Target:  5'- -gCAAgGGGaagGcgucGCGAUgGCGCAUCGUc -3'
miRNA:   3'- aaGUUgCCCa--C----UGCUAgUGCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 8522 0.66 0.802389
Target:  5'- cUCGACGGG--GCGAagUACGaUAUCGCu -3'
miRNA:   3'- aAGUUGCCCacUGCUa-GUGC-GUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 44385 0.67 0.789358
Target:  5'- aUCGAauCGGGUGuaaucgagacucauGCGAUUugGCccgguUCGCa -3'
miRNA:   3'- aAGUU--GCCCAC--------------UGCUAGugCGu----AGCG- -5'
27979 5' -52.3 NC_005886.2 + 4203 0.67 0.782217
Target:  5'- uUUCGACGGGU-ACG-UCuGCGgUAUCGCu -3'
miRNA:   3'- -AAGUUGCCCAcUGCuAG-UGC-GUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 18253 0.67 0.78119
Target:  5'- aUCAagcGCGGcGcGACGAUggcugaaCAgGCAUCGCg -3'
miRNA:   3'- aAGU---UGCC-CaCUGCUA-------GUgCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 31004 0.67 0.761381
Target:  5'- uUUCAAUGGaUGAcuuCGAUC-UGCAUCGUg -3'
miRNA:   3'- -AAGUUGCCcACU---GCUAGuGCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 35161 0.67 0.747528
Target:  5'- cUCAACGcGUGuacguuCGAaccacacgccauccUCACGCAUUGCa -3'
miRNA:   3'- aAGUUGCcCACu-----GCU--------------AGUGCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 35524 0.68 0.739979
Target:  5'- cUCAGCgcgccGGGUGcaACGggCGCGCAguaucgugcgUCGCg -3'
miRNA:   3'- aAGUUG-----CCCAC--UGCuaGUGCGU----------AGCG- -5'
27979 5' -52.3 NC_005886.2 + 36862 0.68 0.729098
Target:  5'- cUCAgGCGGGUaGCGuguuaGCGCGUUGCu -3'
miRNA:   3'- aAGU-UGCCCAcUGCuag--UGCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 22814 0.68 0.707038
Target:  5'- -gCAGCGcGGUGAgcacCGG-CACGCuAUCGCc -3'
miRNA:   3'- aaGUUGC-CCACU----GCUaGUGCG-UAGCG- -5'
27979 5' -52.3 NC_005886.2 + 26962 0.68 0.707038
Target:  5'- ---cGCGGcUGACGcuUCACGCgAUCGCa -3'
miRNA:   3'- aaguUGCCcACUGCu-AGUGCG-UAGCG- -5'
27979 5' -52.3 NC_005886.2 + 46743 0.7 0.616633
Target:  5'- -gCGGCGGGcugGugGAaCACGCcggacgGUCGCg -3'
miRNA:   3'- aaGUUGCCCa--CugCUaGUGCG------UAGCG- -5'
27979 5' -52.3 NC_005886.2 + 39832 0.7 0.605281
Target:  5'- --aAGCGGGUGACGAaauUC-CGCugCGCg -3'
miRNA:   3'- aagUUGCCCACUGCU---AGuGCGuaGCG- -5'
27979 5' -52.3 NC_005886.2 + 42832 0.7 0.571413
Target:  5'- uUUCGACGGcu--UGAUCguACGCAUCGCa -3'
miRNA:   3'- -AAGUUGCCcacuGCUAG--UGCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 36582 0.72 0.470381
Target:  5'- -gCGGCGGG-GACGGgucguucgaaggaaUCggaGCGCAUCGCg -3'
miRNA:   3'- aaGUUGCCCaCUGCU--------------AG---UGCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 31586 0.72 0.463127
Target:  5'- --uGACGGGUGAUGA-CACG-AUCGUa -3'
miRNA:   3'- aagUUGCCCACUGCUaGUGCgUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 22116 0.73 0.413117
Target:  5'- uUUCGgcGCGGGaGACGAcgaaaagccguUCACGCGUgCGCa -3'
miRNA:   3'- -AAGU--UGCCCaCUGCU-----------AGUGCGUA-GCG- -5'
27979 5' -52.3 NC_005886.2 + 40451 0.74 0.384756
Target:  5'- aUCGGCGGcccuuCGAUCAuCGCGUCGCa -3'
miRNA:   3'- aAGUUGCCcacu-GCUAGU-GCGUAGCG- -5'
27979 5' -52.3 NC_005886.2 + 25771 1.11 0.001285
Target:  5'- gUUCAACGGGUGACGAUCACGCAUCGCg -3'
miRNA:   3'- -AAGUUGCCCACUGCUAGUGCGUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.