Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 149263 | 1.13 | 0.013568 |
Target: 5'- cAGACAUGUGAGCAAUAAGGAACGUGGg -3' miRNA: 3'- -UCUGUACACUCGUUAUUCCUUGCACC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 146139 | 0.66 | 0.999922 |
Target: 5'- aGGACccGUGuccGCGc---GGAGCGUGGa -3' miRNA: 3'- -UCUGuaCACu--CGUuauuCCUUGCACC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 142443 | 0.67 | 0.999774 |
Target: 5'- gAGACGgg-GGGU----GGGGGCGUGGa -3' miRNA: 3'- -UCUGUacaCUCGuuauUCCUUGCACC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 129975 | 0.67 | 0.999633 |
Target: 5'- uGGCAgaUGUG-GCAGUGgaagcugagggGGuGGACGUGGa -3' miRNA: 3'- uCUGU--ACACuCGUUAU-----------UC-CUUGCACC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 129330 | 0.71 | 0.993685 |
Target: 5'- aGGAUGUGUGGGUugauGUGGGGGgagaugaagAUGUGGu -3' miRNA: 3'- -UCUGUACACUCGu---UAUUCCU---------UGCACC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 120282 | 0.71 | 0.992676 |
Target: 5'- gGGGCAUGggGGGgGGUGuGG-ACGUGGg -3' miRNA: 3'- -UCUGUACa-CUCgUUAUuCCuUGCACC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 113998 | 0.72 | 0.981554 |
Target: 5'- cGACAUGUGAGgAAcgaAGGGGGCGUu- -3' miRNA: 3'- uCUGUACACUCgUUa--UUCCUUGCAcc -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 102073 | 0.74 | 0.960946 |
Target: 5'- cGugGUGUGAGCGcgGAGGAaauagccgccACGUauGGa -3' miRNA: 3'- uCugUACACUCGUuaUUCCU----------UGCA--CC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 65096 | 0.7 | 0.99458 |
Target: 5'- gGGGCG-GUGGGCGugucGGGAaaaacACGUGGg -3' miRNA: 3'- -UCUGUaCACUCGUuau-UCCU-----UGCACC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 61822 | 0.66 | 0.999956 |
Target: 5'- uGACAUGgaaguggGAGUAcuaguUGGGGGgcuugGCGUGGu -3' miRNA: 3'- uCUGUACa------CUCGUu----AUUCCU-----UGCACC- -5' |
|||||||
2798 | 3' | -46.5 | NC_001491.2 | + | 44343 | 0.66 | 0.999922 |
Target: 5'- uGGAagaGUGggagGAGCAGguacGGAAgGUGGa -3' miRNA: 3'- -UCUg--UACa---CUCGUUauu-CCUUgCACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home