miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27980 3' -57.7 NC_005886.2 + 34433 0.66 0.547668
Target:  5'- uGCGAUCA---CCGUGCCGUGCgugaCGg -3'
miRNA:   3'- uCGUUGGUguaGGCACGGCGCGa---GCa -5'
27980 3' -57.7 NC_005886.2 + 28879 0.66 0.536955
Target:  5'- cGCAGCguauGCAUCCGUcauuGCCGCGUgaacaUCGc -3'
miRNA:   3'- uCGUUGg---UGUAGGCA----CGGCGCG-----AGCa -5'
27980 3' -57.7 NC_005886.2 + 39251 0.66 0.523139
Target:  5'- uGCAugCGCAUUCGUcaaCCGCacuggcguccucauGCUCGUg -3'
miRNA:   3'- uCGUugGUGUAGGCAc--GGCG--------------CGAGCA- -5'
27980 3' -57.7 NC_005886.2 + 38480 0.66 0.494903
Target:  5'- uGGCGagauucGCCACccgguucaCCG-GCCGCGCUUGg -3'
miRNA:   3'- -UCGU------UGGUGua------GGCaCGGCGCGAGCa -5'
27980 3' -57.7 NC_005886.2 + 15110 0.66 0.494903
Target:  5'- cGCGAUCAuuCAUCCGaccgacgauUGCCGCGCa--- -3'
miRNA:   3'- uCGUUGGU--GUAGGC---------ACGGCGCGagca -5'
27980 3' -57.7 NC_005886.2 + 36320 0.68 0.415786
Target:  5'- cGCcGCCGCcgcCCGUGCCGcCGC-CGa -3'
miRNA:   3'- uCGuUGGUGua-GGCACGGC-GCGaGCa -5'
27980 3' -57.7 NC_005886.2 + 22582 0.68 0.38817
Target:  5'- gAGCAcacGCC-CGUCCGacUGCCGUGCgaacgCGa -3'
miRNA:   3'- -UCGU---UGGuGUAGGC--ACGGCGCGa----GCa -5'
27980 3' -57.7 NC_005886.2 + 38527 0.69 0.344904
Target:  5'- cAGCAAUCccuCAUCCGUcucgaaGCUGCGCggCGUg -3'
miRNA:   3'- -UCGUUGGu--GUAGGCA------CGGCGCGa-GCA- -5'
27980 3' -57.7 NC_005886.2 + 18181 0.71 0.269119
Target:  5'- -uCAGCCAUcgUCGcGCCGCGCUUGa -3'
miRNA:   3'- ucGUUGGUGuaGGCaCGGCGCGAGCa -5'
27980 3' -57.7 NC_005886.2 + 7162 0.72 0.236547
Target:  5'- uGCGucgaucGCCACGgugCCgGUGCuCGCGCUCGg -3'
miRNA:   3'- uCGU------UGGUGUa--GG-CACG-GCGCGAGCa -5'
27980 3' -57.7 NC_005886.2 + 511 0.72 0.224472
Target:  5'- cAGCcGCCGCAUCUGcGUCGCGCUg-- -3'
miRNA:   3'- -UCGuUGGUGUAGGCaCGGCGCGAgca -5'
27980 3' -57.7 NC_005886.2 + 26533 1.07 0.000564
Target:  5'- cAGCAACCACAUCCGUGCCGCGCUCGUg -3'
miRNA:   3'- -UCGUUGGUGUAGGCACGGCGCGAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.