miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27980 5' -50.8 NC_005886.2 + 25326 0.66 0.915358
Target:  5'- uCGcCGCGCUGGAACgUGAc---GCGGa -3'
miRNA:   3'- -GCuGCGCGACUUUGaGCUuaacCGCC- -5'
27980 5' -50.8 NC_005886.2 + 38625 0.66 0.901192
Target:  5'- cCGuCGCGCUcgcuGAACUCGAAUcguugcuUGGUGu -3'
miRNA:   3'- -GCuGCGCGAc---UUUGAGCUUA-------ACCGCc -5'
27980 5' -50.8 NC_005886.2 + 26281 0.66 0.895462
Target:  5'- aCGAUGCGCUcGAuucugucgaggucguGCUCGGuaucaauccGGCGGa -3'
miRNA:   3'- -GCUGCGCGA-CUu--------------UGAGCUuaa------CCGCC- -5'
27980 5' -50.8 NC_005886.2 + 35218 0.66 0.894733
Target:  5'- -cACGCGUUGAGuUUCGcg--GGCGGc -3'
miRNA:   3'- gcUGCGCGACUUuGAGCuuaaCCGCC- -5'
27980 5' -50.8 NC_005886.2 + 22073 0.67 0.854818
Target:  5'- cCGACGCGCg---GCUCGAugcGUUcGGCa- -3'
miRNA:   3'- -GCUGCGCGacuuUGAGCU---UAA-CCGcc -5'
27980 5' -50.8 NC_005886.2 + 22252 0.68 0.846061
Target:  5'- uGGCGCGCaaauUGAugauuGCggcgCGAGUgucacgGGCGGu -3'
miRNA:   3'- gCUGCGCG----ACUu----UGa---GCUUAa-----CCGCC- -5'
27980 5' -50.8 NC_005886.2 + 14479 0.68 0.837066
Target:  5'- aCGAUuaaGCGCgGAAagcgggugacguACUCGAAUggaacGGCGGu -3'
miRNA:   3'- -GCUG---CGCGaCUU------------UGAGCUUAa----CCGCC- -5'
27980 5' -50.8 NC_005886.2 + 26700 0.68 0.818401
Target:  5'- cCGcGCGCGaCUGGAAgUCG-GUUGGaCGGc -3'
miRNA:   3'- -GC-UGCGC-GACUUUgAGCuUAACC-GCC- -5'
27980 5' -50.8 NC_005886.2 + 38276 0.69 0.788874
Target:  5'- cCGACGUGC--GAAC-CGAcgUGcGCGGg -3'
miRNA:   3'- -GCUGCGCGacUUUGaGCUuaAC-CGCC- -5'
27980 5' -50.8 NC_005886.2 + 41962 0.69 0.762013
Target:  5'- cCGACaCGCUGAAcgaaguguucgcgccGCUCGGcaucGUaGGCGGu -3'
miRNA:   3'- -GCUGcGCGACUU---------------UGAGCU----UAaCCGCC- -5'
27980 5' -50.8 NC_005886.2 + 11505 0.71 0.658529
Target:  5'- uCGAaaCGCUGGcgcGGCUCGAAaUGGCGa -3'
miRNA:   3'- -GCUgcGCGACU---UUGAGCUUaACCGCc -5'
27980 5' -50.8 NC_005886.2 + 46983 0.72 0.590614
Target:  5'- cCGGCGCGCUaAAuCUUGAucUUGGUGGu -3'
miRNA:   3'- -GCUGCGCGAcUUuGAGCUu-AACCGCC- -5'
27980 5' -50.8 NC_005886.2 + 44509 0.75 0.460441
Target:  5'- uGACGUGCUGAAGC-CGugcaacGUUGaGCGGc -3'
miRNA:   3'- gCUGCGCGACUUUGaGCu-----UAAC-CGCC- -5'
27980 5' -50.8 NC_005886.2 + 39112 0.75 0.44017
Target:  5'- uGAUGCGCUGAcgGACgagcaaCGAAUUGGCc- -3'
miRNA:   3'- gCUGCGCGACU--UUGa-----GCUUAACCGcc -5'
27980 5' -50.8 NC_005886.2 + 26568 1.11 0.002059
Target:  5'- gCGACGCGCUGAAACUCGAAUUGGCGGu -3'
miRNA:   3'- -GCUGCGCGACUUUGAGCUUAACCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.