Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27981 | 3' | -54.1 | NC_005886.2 | + | 35130 | 0.66 | 0.690178 |
Target: 5'- uGCGggGC-GCGCAcgCUUACCaaaGGAUu -3' miRNA: 3'- -UGCuaCGaCGUGUuaGAGUGGg--CCUA- -5' |
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27981 | 3' | -54.1 | NC_005886.2 | + | 42369 | 0.66 | 0.678905 |
Target: 5'- uACGAgguUGCcGCACcgcgcAUC-CACCCGGAg -3' miRNA: 3'- -UGCU---ACGaCGUGu----UAGaGUGGGCCUa -5' |
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27981 | 3' | -54.1 | NC_005886.2 | + | 46470 | 0.66 | 0.667584 |
Target: 5'- uGCGAUGCUGUGCcAUCUCGuuCCCc--- -3' miRNA: 3'- -UGCUACGACGUGuUAGAGU--GGGccua -5' |
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27981 | 3' | -54.1 | NC_005886.2 | + | 32017 | 0.67 | 0.644847 |
Target: 5'- -gGGUGCUGCGC----UCGCaCCGGAUc -3' miRNA: 3'- ugCUACGACGUGuuagAGUG-GGCCUA- -5' |
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27981 | 3' | -54.1 | NC_005886.2 | + | 15020 | 0.67 | 0.610676 |
Target: 5'- cGCGGcuUGCUGCgcgGCAAUCgUCGgUCGGAUg -3' miRNA: 3'- -UGCU--ACGACG---UGUUAG-AGUgGGCCUA- -5' |
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27981 | 3' | -54.1 | NC_005886.2 | + | 23088 | 0.69 | 0.521113 |
Target: 5'- uACGAUuaUGCGCAGgcgCACUCGGAa -3' miRNA: 3'- -UGCUAcgACGUGUUagaGUGGGCCUa -5' |
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27981 | 3' | -54.1 | NC_005886.2 | + | 30144 | 0.7 | 0.466714 |
Target: 5'- cGCGcgGC-GCACGAUCUCcgacaugAUCCGGAc -3' miRNA: 3'- -UGCuaCGaCGUGUUAGAG-------UGGGCCUa -5' |
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27981 | 3' | -54.1 | NC_005886.2 | + | 29940 | 0.99 | 0.00443 |
Target: 5'- -aGAUGCUGCACAAUCUCACCCGGAUc -3' miRNA: 3'- ugCUACGACGUGUUAGAGUGGGCCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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