miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27982 3' -52.5 NC_005886.2 + 24908 0.66 0.851196
Target:  5'- cGCGcGACCggcUCGCGCGgggcguuuUGCUAUCcuaGUCg -3'
miRNA:   3'- -CGCuCUGGa--AGUGCGC--------AUGGUAG---CAG- -5'
27982 3' -52.5 NC_005886.2 + 16976 0.66 0.842404
Target:  5'- cGUGGacgccGACgUUUgagACGCGUACCGUUGUUc -3'
miRNA:   3'- -CGCU-----CUGgAAG---UGCGCAUGGUAGCAG- -5'
27982 3' -52.5 NC_005886.2 + 20126 0.66 0.842404
Target:  5'- cGCacuGAUCaa-GCGCGUGCCGUCGa- -3'
miRNA:   3'- -CGcu-CUGGaagUGCGCAUGGUAGCag -5'
27982 3' -52.5 NC_005886.2 + 8113 0.66 0.83338
Target:  5'- uCGcuGCCUUCuuGCGUAUCgAUCGUUa -3'
miRNA:   3'- cGCucUGGAAGugCGCAUGG-UAGCAG- -5'
27982 3' -52.5 NC_005886.2 + 6052 0.66 0.832465
Target:  5'- cGCGAGcgaugcaagcAUCUgcgcaacUCGCgaGCGUGCUGUCGUCu -3'
miRNA:   3'- -CGCUC----------UGGA-------AGUG--CGCAUGGUAGCAG- -5'
27982 3' -52.5 NC_005886.2 + 38899 0.67 0.805023
Target:  5'- cGCGccauCgCUUCgAUGCGcUGCCGUCGUCg -3'
miRNA:   3'- -CGCucu-G-GAAG-UGCGC-AUGGUAGCAG- -5'
27982 3' -52.5 NC_005886.2 + 11600 0.67 0.795177
Target:  5'- uGCGuGAUgaCUUCGCGUGcaACCGUCGcCg -3'
miRNA:   3'- -CGCuCUG--GAAGUGCGCa-UGGUAGCaG- -5'
27982 3' -52.5 NC_005886.2 + 16334 0.67 0.795177
Target:  5'- uCGGGACCacuugaagcCACGUacgGCCGUCGUCc -3'
miRNA:   3'- cGCUCUGGaa-------GUGCGca-UGGUAGCAG- -5'
27982 3' -52.5 NC_005886.2 + 17416 0.69 0.677766
Target:  5'- aGCaGAGACCgUUCGCGU-UACCcggaacAUCGUCg -3'
miRNA:   3'- -CG-CUCUGG-AAGUGCGcAUGG------UAGCAG- -5'
27982 3' -52.5 NC_005886.2 + 19431 0.69 0.644118
Target:  5'- cGCGAGACCUgcgaagaaACGg--GCUAUCGUCc -3'
miRNA:   3'- -CGCUCUGGAag------UGCgcaUGGUAGCAG- -5'
27982 3' -52.5 NC_005886.2 + 22110 0.7 0.59914
Target:  5'- cGCGGGagacgacgaaaaGCCgUUCACGCGUGCgCAacUUGUCc -3'
miRNA:   3'- -CGCUC------------UGG-AAGUGCGCAUG-GU--AGCAG- -5'
27982 3' -52.5 NC_005886.2 + 20355 0.71 0.532721
Target:  5'- uGCGAGGaugUCGCGaCGUGCCucacgCGUCa -3'
miRNA:   3'- -CGCUCUggaAGUGC-GCAUGGua---GCAG- -5'
27982 3' -52.5 NC_005886.2 + 39935 0.72 0.511134
Target:  5'- cGCGGGcguAUCUucgaUCACGCGggcaauuuCCAUCGUCa -3'
miRNA:   3'- -CGCUC---UGGA----AGUGCGCau------GGUAGCAG- -5'
27982 3' -52.5 NC_005886.2 + 32120 0.72 0.479467
Target:  5'- cGCGAG-CCg-UACGCGUACCucuUCGUUu -3'
miRNA:   3'- -CGCUCuGGaaGUGCGCAUGGu--AGCAG- -5'
27982 3' -52.5 NC_005886.2 + 32447 1.13 0.000907
Target:  5'- cGCGAGACCUUCACGCGUACCAUCGUCa -3'
miRNA:   3'- -CGCUCUGGAAGUGCGCAUGGUAGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.