miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27982 5' -50.7 NC_005886.2 + 13643 0.66 0.903047
Target:  5'- uCGGUCGAUcggcugaucaccgcAACGAGUGCGgCGGAUGUc -3'
miRNA:   3'- -GUCAGCUA--------------UUGCUUGCGC-GCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 6561 0.66 0.911931
Target:  5'- gCGGUCGGccaaaacuGCGucacuGCGaUGCGAGCGCa -3'
miRNA:   3'- -GUCAGCUau------UGCu----UGC-GCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 20484 0.67 0.858448
Target:  5'- gAGUCGAUAGCaacacguuACGCGC-AGCGUc -3'
miRNA:   3'- gUCAGCUAUUGcu------UGCGCGcUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 34672 0.67 0.849731
Target:  5'- aCGGUCGcAUGACGuucAACGCuuacGCGGACGaCa -3'
miRNA:   3'- -GUCAGC-UAUUGC---UUGCG----CGCUUGC-Ga -5'
27982 5' -50.7 NC_005886.2 + 40283 0.68 0.840768
Target:  5'- gCGGUCGAcauCGAGCaUGCGAcGCGCa -3'
miRNA:   3'- -GUCAGCUauuGCUUGcGCGCU-UGCGa -5'
27982 5' -50.7 NC_005886.2 + 26815 0.68 0.831569
Target:  5'- uGGUUGAUGAaguCGAACaGCGCGAA-GCc -3'
miRNA:   3'- gUCAGCUAUU---GCUUG-CGCGCUUgCGa -5'
27982 5' -50.7 NC_005886.2 + 24771 0.68 0.822145
Target:  5'- --cUCGcc-GCGuuGCGCGCGGACGCg -3'
miRNA:   3'- gucAGCuauUGCu-UGCGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 39683 0.69 0.792626
Target:  5'- --cUCGAUGACGAAUacuugGCGCGGGuuCGCg -3'
miRNA:   3'- gucAGCUAUUGCUUG-----CGCGCUU--GCGa -5'
27982 5' -50.7 NC_005886.2 + 33128 0.69 0.750805
Target:  5'- cCGGUCGAUGACGcagaacucaucGAguugauccguuCGCGUGAACGUc -3'
miRNA:   3'- -GUCAGCUAUUGC-----------UU-----------GCGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 16875 0.72 0.604699
Target:  5'- uCGGcCGAUGAaaAGCGCGCGAugGUc -3'
miRNA:   3'- -GUCaGCUAUUgcUUGCGCGCUugCGa -5'
27982 5' -50.7 NC_005886.2 + 22649 0.72 0.581984
Target:  5'- gCAGUCGG--ACGGGCGUGUGcucGCGCUc -3'
miRNA:   3'- -GUCAGCUauUGCUUGCGCGCu--UGCGA- -5'
27982 5' -50.7 NC_005886.2 + 38968 0.73 0.537164
Target:  5'- gCAGcgcaUCGA-AGCGAugGCGCGAGCGa- -3'
miRNA:   3'- -GUC----AGCUaUUGCUugCGCGCUUGCga -5'
27982 5' -50.7 NC_005886.2 + 19224 0.66 0.918426
Target:  5'- gCAGaUGGUAuuGCGAuggacgaGCGUGAACGCg -3'
miRNA:   3'- -GUCaGCUAU--UGCUug-----CGCGCUUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.