miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27982 5' -50.7 NC_005886.2 + 152 0.66 0.89806
Target:  5'- -uGUCGGUGAUGAuu-CGCGAacauugGCGCUg -3'
miRNA:   3'- guCAGCUAUUGCUugcGCGCU------UGCGA- -5'
27982 5' -50.7 NC_005886.2 + 643 0.71 0.627514
Target:  5'- -cGUCGAU--CGAAUGCGUGAcauACGCg -3'
miRNA:   3'- guCAGCUAuuGCUUGCGCGCU---UGCGa -5'
27982 5' -50.7 NC_005886.2 + 4131 0.68 0.822145
Target:  5'- -cGUCGAgcaaauCGGGCGCGCuuACGUUg -3'
miRNA:   3'- guCAGCUauu---GCUUGCGCGcuUGCGA- -5'
27982 5' -50.7 NC_005886.2 + 6561 0.66 0.911931
Target:  5'- gCGGUCGGccaaaacuGCGucacuGCGaUGCGAGCGCa -3'
miRNA:   3'- -GUCAGCUau------UGCu----UGC-GCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 6833 0.68 0.812505
Target:  5'- -uGUCGAgcGCGA---UGCGAACGCUa -3'
miRNA:   3'- guCAGCUauUGCUugcGCGCUUGCGA- -5'
27982 5' -50.7 NC_005886.2 + 7335 0.66 0.89806
Target:  5'- cCGGcCGAUGACGGuaGCGCaGCcGGCGUa -3'
miRNA:   3'- -GUCaGCUAUUGCU--UGCG-CGcUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 10832 0.68 0.816386
Target:  5'- uCAGUUGAUGucGCGAgugcagccgcuuguuGCuucaGCGCGAACGUa -3'
miRNA:   3'- -GUCAGCUAU--UGCU---------------UG----CGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 13643 0.66 0.903047
Target:  5'- uCGGUCGAUcggcugaucaccgcAACGAGUGCGgCGGAUGUc -3'
miRNA:   3'- -GUCAGCUA--------------UUGCUUGCGC-GCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 15043 0.7 0.727965
Target:  5'- uCGGUCGGaugAAUGAuCGCGCGGggaugccGCGCg -3'
miRNA:   3'- -GUCAGCUa--UUGCUuGCGCGCU-------UGCGa -5'
27982 5' -50.7 NC_005886.2 + 16875 0.72 0.604699
Target:  5'- uCGGcCGAUGAaaAGCGCGCGAugGUc -3'
miRNA:   3'- -GUCaGCUAUUgcUUGCGCGCUugCGa -5'
27982 5' -50.7 NC_005886.2 + 19224 0.66 0.918426
Target:  5'- gCAGaUGGUAuuGCGAuggacgaGCGUGAACGCg -3'
miRNA:   3'- -GUCaGCUAU--UGCUug-----CGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 20484 0.67 0.858448
Target:  5'- gAGUCGAUAGCaacacguuACGCGC-AGCGUc -3'
miRNA:   3'- gUCAGCUAUUGcu------UGCGCGcUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 21115 0.66 0.890691
Target:  5'- uCAGUUGGUcuGCGcuauCGCGCGuACGCc -3'
miRNA:   3'- -GUCAGCUAu-UGCuu--GCGCGCuUGCGa -5'
27982 5' -50.7 NC_005886.2 + 22649 0.72 0.581984
Target:  5'- gCAGUCGG--ACGGGCGUGUGcucGCGCUc -3'
miRNA:   3'- -GUCAGCUauUGCUUGCGCGCu--UGCGA- -5'
27982 5' -50.7 NC_005886.2 + 23938 0.71 0.683302
Target:  5'- gUAGUCGAUGuCGAuuccuguGCGaCGaCGAGCGCa -3'
miRNA:   3'- -GUCAGCUAUuGCU-------UGC-GC-GCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 24771 0.68 0.822145
Target:  5'- --cUCGcc-GCGuuGCGCGCGGACGCg -3'
miRNA:   3'- gucAGCuauUGCu-UGCGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 25172 0.67 0.858448
Target:  5'- -cGUCGAUGcCGuucACGCGaugcaCGAACGCUu -3'
miRNA:   3'- guCAGCUAUuGCu--UGCGC-----GCUUGCGA- -5'
27982 5' -50.7 NC_005886.2 + 26815 0.68 0.831569
Target:  5'- uGGUUGAUGAaguCGAACaGCGCGAA-GCc -3'
miRNA:   3'- gUCAGCUAUU---GCUUG-CGCGCUUgCGa -5'
27982 5' -50.7 NC_005886.2 + 28834 0.66 0.918426
Target:  5'- gCGGaUCGAUGAUGucgcagaguuCGCGCaGACGCa -3'
miRNA:   3'- -GUC-AGCUAUUGCuu--------GCGCGcUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 31977 0.68 0.802662
Target:  5'- aGGUCGAUGAUGcaguucGGCGCaccgauguaGCGAACGUc -3'
miRNA:   3'- gUCAGCUAUUGC------UUGCG---------CGCUUGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.