miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27982 5' -50.7 NC_005886.2 + 31977 0.68 0.802662
Target:  5'- aGGUCGAUGAUGcaguucGGCGCaccgauguaGCGAACGUc -3'
miRNA:   3'- gUCAGCUAUUGC------UUGCG---------CGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 39683 0.69 0.792626
Target:  5'- --cUCGAUGACGAAUacuugGCGCGGGuuCGCg -3'
miRNA:   3'- gucAGCUAUUGCUUG-----CGCGCUU--GCGa -5'
27982 5' -50.7 NC_005886.2 + 38557 0.69 0.792626
Target:  5'- --uUCGAguucAGCGAGCGCGaCGGACGg- -3'
miRNA:   3'- gucAGCUa---UUGCUUGCGC-GCUUGCga -5'
27982 5' -50.7 NC_005886.2 + 44937 0.69 0.761487
Target:  5'- gCAGUCGAU--CGGAUGCGCaGAuUGCg -3'
miRNA:   3'- -GUCAGCUAuuGCUUGCGCG-CUuGCGa -5'
27982 5' -50.7 NC_005886.2 + 39178 0.69 0.750805
Target:  5'- cCAGUgCGGuUGACGAAUGCGCaugcacgccucGAAUGCg -3'
miRNA:   3'- -GUCA-GCU-AUUGCUUGCGCG-----------CUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 33128 0.69 0.750805
Target:  5'- cCGGUCGAUGACGcagaacucaucGAguugauccguuCGCGUGAACGUc -3'
miRNA:   3'- -GUCAGCUAUUGC-----------UU-----------GCGCGCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 15043 0.7 0.727965
Target:  5'- uCGGUCGGaugAAUGAuCGCGCGGggaugccGCGCg -3'
miRNA:   3'- -GUCAGCUa--UUGCUuGCGCGCU-------UGCGa -5'
27982 5' -50.7 NC_005886.2 + 23938 0.71 0.683302
Target:  5'- gUAGUCGAUGuCGAuuccuguGCGaCGaCGAGCGCa -3'
miRNA:   3'- -GUCAGCUAUuGCU-------UGC-GC-GCUUGCGa -5'
27982 5' -50.7 NC_005886.2 + 643 0.71 0.627514
Target:  5'- -cGUCGAU--CGAAUGCGUGAcauACGCg -3'
miRNA:   3'- guCAGCUAuuGCUUGCGCGCU---UGCGa -5'
27982 5' -50.7 NC_005886.2 + 16875 0.72 0.604699
Target:  5'- uCGGcCGAUGAaaAGCGCGCGAugGUc -3'
miRNA:   3'- -GUCaGCUAUUgcUUGCGCGCUugCGa -5'
27982 5' -50.7 NC_005886.2 + 22649 0.72 0.581984
Target:  5'- gCAGUCGG--ACGGGCGUGUGcucGCGCUc -3'
miRNA:   3'- -GUCAGCUauUGCUUGCGCGCu--UGCGA- -5'
27982 5' -50.7 NC_005886.2 + 38968 0.73 0.537164
Target:  5'- gCAGcgcaUCGA-AGCGAugGCGCGAGCGa- -3'
miRNA:   3'- -GUC----AGCUaUUGCUugCGCGCUUGCga -5'
27982 5' -50.7 NC_005886.2 + 32484 1.08 0.00316
Target:  5'- aCAGUCGAUAACGAACGCGCGAACGCUu -3'
miRNA:   3'- -GUCAGCUAUUGCUUGCGCGCUUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.