Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27983 | 3' | -62 | NC_005886.2 | + | 32555 | 0.95 | 0.002712 |
Target: 5'- uGCACGCACCGCGU-CaCGCGCGGCGGUg -3' miRNA: 3'- -CGUGCGUGGCGCAuG-GCGCGCCGCCA- -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 42377 | 0.76 | 0.069485 |
Target: 5'- uGC-CGCACCGCGcauccACCcggaGUGCGGCGGUa -3' miRNA: 3'- -CGuGCGUGGCGCa----UGG----CGCGCCGCCA- -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 24785 | 0.73 | 0.113825 |
Target: 5'- -gGCGCaucaauaaacucGCCGCGUugCGCGCGgacGCGGg -3' miRNA: 3'- cgUGCG------------UGGCGCAugGCGCGC---CGCCa -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 25787 | 0.73 | 0.113826 |
Target: 5'- uCACGCAUCGCG-GCCGCGUgucGGCGcGUu -3' miRNA: 3'- cGUGCGUGGCGCaUGGCGCG---CCGC-CA- -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 42107 | 0.72 | 0.133762 |
Target: 5'- -gGCGCACCGUuggguuaaauGUACCGCGUGGUcGUu -3' miRNA: 3'- cgUGCGUGGCG----------CAUGGCGCGCCGcCA- -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 23185 | 0.7 | 0.203462 |
Target: 5'- cGCACGUgaACgGCucGCCGuCGUGGCGGa -3' miRNA: 3'- -CGUGCG--UGgCGcaUGGC-GCGCCGCCa -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 40997 | 0.7 | 0.203462 |
Target: 5'- aGCGCGCACCGUcaugGCUGUGuCGGCa-- -3' miRNA: 3'- -CGUGCGUGGCGca--UGGCGC-GCCGcca -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 35625 | 0.69 | 0.213572 |
Target: 5'- aGUAUuCGCCGCGUgcgcuauGCgGCGCGGCGa- -3' miRNA: 3'- -CGUGcGUGGCGCA-------UGgCGCGCCGCca -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 38584 | 0.69 | 0.24225 |
Target: 5'- gGC-CGCGCCGCacuUGCUgauccaaGCGCGGcCGGUg -3' miRNA: 3'- -CGuGCGUGGCGc--AUGG-------CGCGCC-GCCA- -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 21763 | 0.69 | 0.242856 |
Target: 5'- -uGCGCAUCGC--AUCGCGCGGCa-- -3' miRNA: 3'- cgUGCGUGGCGcaUGGCGCGCCGcca -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 35702 | 0.68 | 0.261596 |
Target: 5'- cGC-CGCGCCGCaUAgCGCacGCGGCGa- -3' miRNA: 3'- -CGuGCGUGGCGcAUgGCG--CGCCGCca -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 22141 | 0.68 | 0.2681 |
Target: 5'- -aACGCAUCGa--GCCGCGCGuCGGUa -3' miRNA: 3'- cgUGCGUGGCgcaUGGCGCGCcGCCA- -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 29287 | 0.68 | 0.280134 |
Target: 5'- -aACGCGCCGUucgaugaagccGCUGCGCGuGCGGg -3' miRNA: 3'- cgUGCGUGGCGca---------UGGCGCGC-CGCCa -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 28712 | 0.67 | 0.288394 |
Target: 5'- cGCGuCGCACCGUucGUGCCauCGUGGCGu- -3' miRNA: 3'- -CGU-GCGUGGCG--CAUGGc-GCGCCGCca -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 34439 | 0.67 | 0.295421 |
Target: 5'- uCGCGCugCGaucacCGUGCCGUGCGuGaCGGc -3' miRNA: 3'- cGUGCGugGC-----GCAUGGCGCGC-C-GCCa -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 34546 | 0.67 | 0.295421 |
Target: 5'- uCACGCugCGCGU---GCGgGGUGGa -3' miRNA: 3'- cGUGCGugGCGCAuggCGCgCCGCCa -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 24668 | 0.67 | 0.295421 |
Target: 5'- cGCGCGcCAUCGaaGUAaaaCGCGCaGCGGUa -3' miRNA: 3'- -CGUGC-GUGGCg-CAUg--GCGCGcCGCCA- -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 23287 | 0.67 | 0.309874 |
Target: 5'- uGUACGCACCGCaacagACgaaGCGCGGUauuuuuGGUu -3' miRNA: 3'- -CGUGCGUGGCGca---UGg--CGCGCCG------CCA- -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 6808 | 0.67 | 0.32486 |
Target: 5'- uGCAauCGCGCUGCaucaaaCGgGCGGCGGa -3' miRNA: 3'- -CGU--GCGUGGCGcaug--GCgCGCCGCCa -5' |
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27983 | 3' | -62 | NC_005886.2 | + | 25233 | 0.67 | 0.327922 |
Target: 5'- gGUACGCGuuuugcgauaacguuCCGCGUcacguuCCaGCGCGGCGa- -3' miRNA: 3'- -CGUGCGU---------------GGCGCAu-----GG-CGCGCCGCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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