Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27983 | 3' | -62 | NC_005886.2 | + | 40997 | 0.7 | 0.203462 |
|
Target: 5'- aGCGCGCACCGUcaugGCUGUGuCGGCa-- -3' miRNA: 3'- -CGUGCGUGGCGca--UGGCGC-GCCGcca -5' |
|||||||
| 27983 | 3' | -62 | NC_005886.2 | + | 42107 | 0.72 | 0.133762 |
|
Target: 5'- -gGCGCACCGUuggguuaaauGUACCGCGUGGUcGUu -3' miRNA: 3'- cgUGCGUGGCG----------CAUGGCGCGCCGcCA- -5' |
|||||||
| 27983 | 3' | -62 | NC_005886.2 | + | 25787 | 0.73 | 0.113826 |
|
Target: 5'- uCACGCAUCGCG-GCCGCGUgucGGCGcGUu -3' miRNA: 3'- cGUGCGUGGCGCaUGGCGCG---CCGC-CA- -5' |
|||||||
| 27983 | 3' | -62 | NC_005886.2 | + | 24785 | 0.73 | 0.113825 |
|
Target: 5'- -gGCGCaucaauaaacucGCCGCGUugCGCGCGgacGCGGg -3' miRNA: 3'- cgUGCG------------UGGCGCAugGCGCGC---CGCCa -5' |
|||||||
| 27983 | 3' | -62 | NC_005886.2 | + | 42377 | 0.76 | 0.069485 |
|
Target: 5'- uGC-CGCACCGCGcauccACCcggaGUGCGGCGGUa -3' miRNA: 3'- -CGuGCGUGGCGCa----UGG----CGCGCCGCCA- -5' |
|||||||
| 27983 | 3' | -62 | NC_005886.2 | + | 32555 | 0.95 | 0.002712 |
|
Target: 5'- uGCACGCACCGCGU-CaCGCGCGGCGGUg -3' miRNA: 3'- -CGUGCGUGGCGCAuG-GCGCGCCGCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home