miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27983 5' -54.4 NC_005886.2 + 8000 0.67 0.684153
Target:  5'- cGACCuGUAcguUGGGCGuguuaGCAGCgGGCu -3'
miRNA:   3'- aCUGG-CAUu--GCUCGCug---CGUUGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 24686 0.67 0.684153
Target:  5'- cGGCCGcUAgaagccccGCGuccGCG-CGCAACgCGGCg -3'
miRNA:   3'- aCUGGC-AU--------UGCu--CGCuGCGUUG-GCCG- -5'
27983 5' -54.4 NC_005886.2 + 12569 0.67 0.683055
Target:  5'- -aAUCGUAuGCGGGCGcgucguucaugucGCuGCAACUGGCa -3'
miRNA:   3'- acUGGCAU-UGCUCGC-------------UG-CGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 42057 0.67 0.678661
Target:  5'- aGACCGccuacgaUGcCGAGCGGCGCgaacacuucguucaGcgugucgGCCGGCa -3'
miRNA:   3'- aCUGGC-------AUuGCUCGCUGCG--------------U-------UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 1484 0.67 0.677561
Target:  5'- cGGCCc-GACGAGCGccaguggcaccuuaaGCGUcgauuuGCCGGCg -3'
miRNA:   3'- aCUGGcaUUGCUCGC---------------UGCGu-----UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 41969 0.67 0.673158
Target:  5'- cGACaauCGgcGCGggGGCGGCGU--CCGGCg -3'
miRNA:   3'- aCUG---GCauUGC--UCGCUGCGuuGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 11762 0.67 0.673158
Target:  5'- -cGCCGacgauGCGAuCGACGUGGCCGGg -3'
miRNA:   3'- acUGGCau---UGCUcGCUGCGUUGGCCg -5'
27983 5' -54.4 NC_005886.2 + 20630 0.67 0.673158
Target:  5'- aGuCCGcUAACGAuccucGCGAUaGCGGCgCGGCa -3'
miRNA:   3'- aCuGGC-AUUGCU-----CGCUG-CGUUG-GCCG- -5'
27983 5' -54.4 NC_005886.2 + 1535 0.67 0.673158
Target:  5'- gGGCCGaUAugGGGCaucGugGCGugCguGGCg -3'
miRNA:   3'- aCUGGC-AUugCUCG---CugCGUugG--CCG- -5'
27983 5' -54.4 NC_005886.2 + 36277 0.67 0.661018
Target:  5'- cGGgCGgcACGGGCGGCaucggcgGCGGCauCGGCg -3'
miRNA:   3'- aCUgGCauUGCUCGCUG-------CGUUG--GCCG- -5'
27983 5' -54.4 NC_005886.2 + 24958 0.68 0.651061
Target:  5'- aUGGCaCGUggUGAuucGCGccGCGCAcucggguuaaACCGGCu -3'
miRNA:   3'- -ACUG-GCAuuGCU---CGC--UGCGU----------UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 44498 0.68 0.651061
Target:  5'- -aGCCGUGcaacguUGAGCGGCuGCgAACCGGg -3'
miRNA:   3'- acUGGCAUu-----GCUCGCUG-CG-UUGGCCg -5'
27983 5' -54.4 NC_005886.2 + 1604 0.68 0.63998
Target:  5'- aUGACCGaauuCGAGaugaauacCGACGacGCCGGCa -3'
miRNA:   3'- -ACUGGCauu-GCUC--------GCUGCguUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 21299 0.68 0.63998
Target:  5'- aGACCGUGcuuaagguCGAcGCGGCGCAgguGCUcGCg -3'
miRNA:   3'- aCUGGCAUu-------GCU-CGCUGCGU---UGGcCG- -5'
27983 5' -54.4 NC_005886.2 + 16314 0.68 0.638872
Target:  5'- cGGCCGgcGCGAuguugaaGCGcccguuCGCAaccuaccgucagACCGGCg -3'
miRNA:   3'- aCUGGCauUGCU-------CGCu-----GCGU------------UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 14538 0.69 0.584668
Target:  5'- cGAUCGgAACcGGCGACGCGuACgaGGCg -3'
miRNA:   3'- aCUGGCaUUGcUCGCUGCGU-UGg-CCG- -5'
27983 5' -54.4 NC_005886.2 + 19507 0.69 0.584668
Target:  5'- cGGCCGgacguucAACGAGCGugGUuucaucuuGCgCGGUa -3'
miRNA:   3'- aCUGGCa------UUGCUCGCugCGu-------UG-GCCG- -5'
27983 5' -54.4 NC_005886.2 + 32679 0.69 0.584668
Target:  5'- -aACCGguuCG-GCGGUGCAGCCGGUu -3'
miRNA:   3'- acUGGCauuGCuCGCUGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 36334 0.69 0.57369
Target:  5'- cGGgCGgcACGGGCGGUGguACgGGCg -3'
miRNA:   3'- aCUgGCauUGCUCGCUGCguUGgCCG- -5'
27983 5' -54.4 NC_005886.2 + 36218 0.69 0.57369
Target:  5'- cGGCggCGgcACGGGCGGCaCGGgCGGCa -3'
miRNA:   3'- aCUG--GCauUGCUCGCUGcGUUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.