Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27984 | 3' | -52.5 | NC_005886.2 | + | 8309 | 0.66 | 0.77233 |
Target: 5'- aCACGCUGUUguaUGCGUCGaaUGCAGAg -3' miRNA: 3'- aGUGCGACAGg--GCGUAGUaaGCGUUU- -5' |
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27984 | 3' | -52.5 | NC_005886.2 | + | 32172 | 0.67 | 0.750927 |
Target: 5'- cUCGCGCaGUgggCGCGUgAUUCGCAGAa -3' miRNA: 3'- -AGUGCGaCAgg-GCGUAgUAAGCGUUU- -5' |
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27984 | 3' | -52.5 | NC_005886.2 | + | 32550 | 0.67 | 0.74002 |
Target: 5'- -uGCGCUGcacgCaCCGCGUCAcgCGCGGc -3' miRNA: 3'- agUGCGACa---G-GGCGUAGUaaGCGUUu -5' |
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27984 | 3' | -52.5 | NC_005886.2 | + | 31304 | 0.68 | 0.672534 |
Target: 5'- -gACGgUGcCCCaUAUCAUUCGCGAAg -3' miRNA: 3'- agUGCgACaGGGcGUAGUAAGCGUUU- -5' |
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27984 | 3' | -52.5 | NC_005886.2 | + | 20418 | 0.69 | 0.615018 |
Target: 5'- gUCGCGacaUCCuCGCAUCGUUgCGCGAAa -3' miRNA: 3'- -AGUGCgacAGG-GCGUAGUAA-GCGUUU- -5' |
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27984 | 3' | -52.5 | NC_005886.2 | + | 32111 | 0.71 | 0.502368 |
Target: 5'- cUCGCGCUGaaCCGCGUgUAUUCGCc-- -3' miRNA: 3'- -AGUGCGACagGGCGUA-GUAAGCGuuu -5' |
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27984 | 3' | -52.5 | NC_005886.2 | + | 28544 | 0.71 | 0.470229 |
Target: 5'- uUCACGUUGUUCCGCA-CGUuugagUUGCAAc -3' miRNA: 3'- -AGUGCGACAGGGCGUaGUA-----AGCGUUu -5' |
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27984 | 3' | -52.5 | NC_005886.2 | + | 28606 | 0.73 | 0.390131 |
Target: 5'- -uGCGCUGgugCCCGaucCAUUCGCAGAa -3' miRNA: 3'- agUGCGACa--GGGCguaGUAAGCGUUU- -5' |
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27984 | 3' | -52.5 | NC_005886.2 | + | 32681 | 1.07 | 0.001874 |
Target: 5'- gUCACGCUGUCCCGCAUCAUUCGCAAAu -3' miRNA: 3'- -AGUGCGACAGGGCGUAGUAAGCGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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