Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 8831 | 0.66 | 0.731077 |
|
Target: 5'- gGUGCGC--ACGAacGCCG-ACACGUu -3' miRNA: 3'- gCACGCGcuUGCUcuCGGCuUGUGCA- -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 29268 | 0.66 | 0.709631 |
|
Target: 5'- cCGcUGCGCGuGCGGGuaAGCCGAuugaAUGUg -3' miRNA: 3'- -GC-ACGCGCuUGCUC--UCGGCUug--UGCA- -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 32109 | 0.66 | 0.698787 |
|
Target: 5'- --cGCGCccacuGCGcGAGCCGuACGCGUa -3' miRNA: 3'- gcaCGCGcu---UGCuCUCGGCuUGUGCA- -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 42179 | 0.66 | 0.698787 |
|
Target: 5'- gGUGCGCG-ACGAGGGaacugcguuucaCUGGuGCGCGUu -3' miRNA: 3'- gCACGCGCuUGCUCUC------------GGCU-UGUGCA- -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 23601 | 0.66 | 0.687878 |
|
Target: 5'- gCGUGCGUGAGCcGGAcaagcaaguGCCGGGgGCa- -3' miRNA: 3'- -GCACGCGCUUGcUCU---------CGGCUUgUGca -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 45044 | 0.67 | 0.64381 |
|
Target: 5'- -uUGCGCGGuaagAUGcGAGCCuuGAACACGg -3' miRNA: 3'- gcACGCGCU----UGCuCUCGG--CUUGUGCa -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 15073 | 0.67 | 0.63274 |
|
Target: 5'- --cGCGCGAugGuGcGCCGAAuuCAUGUa -3' miRNA: 3'- gcaCGCGCUugCuCuCGGCUU--GUGCA- -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 1100 | 0.68 | 0.588549 |
|
Target: 5'- --cGCGCGAuauACGcAG-GCCGAAUGCGa -3' miRNA: 3'- gcaCGCGCU---UGC-UCuCGGCUUGUGCa -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 38291 | 0.72 | 0.35881 |
|
Target: 5'- aCGUGCGCGGGCGuGAugaGAACGCGc -3' miRNA: 3'- -GCACGCGCUUGCuCUcggCUUGUGCa -5' |
|||||||
| 27984 | 5' | -54.9 | NC_005886.2 | + | 32716 | 1.07 | 0.001415 |
|
Target: 5'- gCGUGCGCGAACGAGAGCCGAACACGUc -3' miRNA: 3'- -GCACGCGCUUGCUCUCGGCUUGUGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home