miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27985 3' -58.2 NC_005886.2 + 24914 0.66 0.493018
Target:  5'- -aCGCCCCGCgcgaccggcucGCGCGgGGCGUu---- -3'
miRNA:   3'- agGUGGGGCG-----------UGCGCgUCGCAcuuau -5'
27985 3' -58.2 NC_005886.2 + 24838 0.66 0.493018
Target:  5'- -aCGCCCCGCgcgagccggucGCGCGgGGCGUu---- -3'
miRNA:   3'- agGUGGGGCG-----------UGCGCgUCGCAcuuau -5'
27985 3' -58.2 NC_005886.2 + 38515 0.66 0.482747
Target:  5'- aUCCGUCUCGaagcUGCGCGGCGUGAc-- -3'
miRNA:   3'- -AGGUGGGGCgu--GCGCGUCGCACUuau -5'
27985 3' -58.2 NC_005886.2 + 13511 0.67 0.442753
Target:  5'- aUCCAgUUCGCACGCugGCAaCGUGAAg- -3'
miRNA:   3'- -AGGUgGGGCGUGCG--CGUcGCACUUau -5'
27985 3' -58.2 NC_005886.2 + 32560 0.67 0.404697
Target:  5'- -gCACCgCGuCACGCGCGGCGg----- -3'
miRNA:   3'- agGUGGgGC-GUGCGCGUCGCacuuau -5'
27985 3' -58.2 NC_005886.2 + 38583 0.68 0.368771
Target:  5'- gCCGCgCCGCACuugcugauccaaGCGCGGCcgGUGAAc- -3'
miRNA:   3'- aGGUGgGGCGUG------------CGCGUCG--CACUUau -5'
27985 3' -58.2 NC_005886.2 + 35701 0.68 0.351646
Target:  5'- gCCGCgCCGCAUaGCGCAcGCGgcGAAUAc -3'
miRNA:   3'- aGGUGgGGCGUG-CGCGU-CGCa-CUUAU- -5'
27985 3' -58.2 NC_005886.2 + 43752 0.69 0.319117
Target:  5'- uUCgGCCgugaCGCugGCGCAGCGuUGGGc- -3'
miRNA:   3'- -AGgUGGg---GCGugCGCGUCGC-ACUUau -5'
27985 3' -58.2 NC_005886.2 + 32627 0.7 0.267743
Target:  5'- aCCGCCgCGCgugACGCGguGCGUGc--- -3'
miRNA:   3'- aGGUGGgGCG---UGCGCguCGCACuuau -5'
27985 3' -58.2 NC_005886.2 + 29197 0.74 0.161658
Target:  5'- aUCgGCuuaCCCGCACGCGCAGCGg----- -3'
miRNA:   3'- -AGgUG---GGGCGUGCGCGUCGCacuuau -5'
27985 3' -58.2 NC_005886.2 + 34548 0.74 0.14885
Target:  5'- aUUCACgCUGCGCGUGCGGgGUGGAUu -3'
miRNA:   3'- -AGGUGgGGCGUGCGCGUCgCACUUAu -5'
27985 3' -58.2 NC_005886.2 + 34477 1.07 0.000496
Target:  5'- aUCCACCCCGCACGCGCAGCGUGAAUAa -3'
miRNA:   3'- -AGGUGGGGCGUGCGCGUCGCACUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.