miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27985 5' -59.3 NC_005886.2 + 25635 0.66 0.425859
Target:  5'- uGUGCCacgCCAGUuccCAUGCGGCGc- -3'
miRNA:   3'- uCGCGGguaGGUCGu--GUGCGCCGUua -5'
27985 5' -59.3 NC_005886.2 + 41768 0.66 0.406969
Target:  5'- aAGCGCaacuuaccgguaCUGUCCAcauGCAUACGCaGGCGAUc -3'
miRNA:   3'- -UCGCG------------GGUAGGU---CGUGUGCG-CCGUUA- -5'
27985 5' -59.3 NC_005886.2 + 11485 0.66 0.406969
Target:  5'- uGCGCgCGUCUuaAGCGCAC-CGGCc-- -3'
miRNA:   3'- uCGCGgGUAGG--UCGUGUGcGCCGuua -5'
27985 5' -59.3 NC_005886.2 + 36269 0.66 0.397723
Target:  5'- cGGCGgCaCGggCGGCACGgGCGGCAu- -3'
miRNA:   3'- -UCGCgG-GUagGUCGUGUgCGCCGUua -5'
27985 5' -59.3 NC_005886.2 + 36221 0.66 0.397723
Target:  5'- cGGCGgCaCGggCGGCACGgGCGGCAu- -3'
miRNA:   3'- -UCGCgG-GUagGUCGUGUgCGCCGUua -5'
27985 5' -59.3 NC_005886.2 + 1738 0.66 0.388613
Target:  5'- uGGCguaugGCCCGUUgCGGCGgGUGCGGCAGUg -3'
miRNA:   3'- -UCG-----CGGGUAG-GUCGUgUGCGCCGUUA- -5'
27985 5' -59.3 NC_005886.2 + 13550 0.66 0.388613
Target:  5'- cGCGCCgaCAUCCGccGCACucguUGCGGUGAUc -3'
miRNA:   3'- uCGCGG--GUAGGU--CGUGu---GCGCCGUUA- -5'
27985 5' -59.3 NC_005886.2 + 11516 0.66 0.379641
Target:  5'- cGUGCCCGauUUCGaaacGCugGCGCGGCu-- -3'
miRNA:   3'- uCGCGGGU--AGGU----CGugUGCGCCGuua -5'
27985 5' -59.3 NC_005886.2 + 26776 0.67 0.369934
Target:  5'- uGcCGUCCAaccgacuUCCAGuCGCGCGCGGaCGGUu -3'
miRNA:   3'- uC-GCGGGU-------AGGUC-GUGUGCGCC-GUUA- -5'
27985 5' -59.3 NC_005886.2 + 7082 0.68 0.290394
Target:  5'- gAGCGCgagCA-CCGGCAC-CGUGGCGAUc -3'
miRNA:   3'- -UCGCGg--GUaGGUCGUGuGCGCCGUUA- -5'
27985 5' -59.3 NC_005886.2 + 1546 0.68 0.28315
Target:  5'- uGGCGCUCGUCgGGCcgAUAUGgGGCAu- -3'
miRNA:   3'- -UCGCGGGUAGgUCG--UGUGCgCCGUua -5'
27985 5' -59.3 NC_005886.2 + 26008 0.69 0.262277
Target:  5'- gGGCGUCCugCCAGUAC-UGCGGCGu- -3'
miRNA:   3'- -UCGCGGGuaGGUCGUGuGCGCCGUua -5'
27985 5' -59.3 NC_005886.2 + 13528 0.69 0.249068
Target:  5'- cGCGCCgGccgacuucgaUCCAGUucGCACGCuGGCAAc -3'
miRNA:   3'- uCGCGGgU----------AGGUCG--UGUGCG-CCGUUa -5'
27985 5' -59.3 NC_005886.2 + 45787 0.72 0.171434
Target:  5'- uGCaGCCCAUCCGGaACACGCGuGaCGAUa -3'
miRNA:   3'- uCG-CGGGUAGGUCgUGUGCGC-C-GUUA- -5'
27985 5' -59.3 NC_005886.2 + 24696 0.72 0.166808
Target:  5'- aAGCcCCgCGUCCGcGCGCaACGCGGCGAg -3'
miRNA:   3'- -UCGcGG-GUAGGU-CGUG-UGCGCCGUUa -5'
27985 5' -59.3 NC_005886.2 + 35699 0.78 0.063571
Target:  5'- cGCGCCgCAU--AGCGCACGCGGCGAa -3'
miRNA:   3'- uCGCGG-GUAggUCGUGUGCGCCGUUa -5'
27985 5' -59.3 NC_005886.2 + 34515 1.06 0.000434
Target:  5'- aAGCGCCCAUCCAGCACACGCGGCAAUg -3'
miRNA:   3'- -UCGCGGGUAGGUCGUGUGCGCCGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.