Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27986 | 3' | -60.8 | NC_005886.2 | + | 16593 | 0.66 | 0.386005 |
|
Target: 5'- uUGCACCUGaaGCGCgguaAGGCCGUUg -3' miRNA: 3'- -ACGUGGGCcgCGCGacucUUCGGCAG- -5' |
|||||||
| 27986 | 3' | -60.8 | NC_005886.2 | + | 13565 | 0.66 | 0.386005 |
|
Target: 5'- cGCACUCGuuGCGgUGAucAGCCGaUCg -3' miRNA: 3'- aCGUGGGCcgCGCgACUcuUCGGC-AG- -5' |
|||||||
| 27986 | 3' | -60.8 | NC_005886.2 | + | 45108 | 0.66 | 0.386005 |
|
Target: 5'- cUGCACCCaugaaGGCG-GCUGAuaauagaauuGAuAGCCGUg -3' miRNA: 3'- -ACGUGGG-----CCGCgCGACU----------CU-UCGGCAg -5' |
|||||||
| 27986 | 3' | -60.8 | NC_005886.2 | + | 34344 | 0.66 | 0.360167 |
|
Target: 5'- aGUACCCGGa--GUUGAu--GCCGUCa -3' miRNA: 3'- aCGUGGGCCgcgCGACUcuuCGGCAG- -5' |
|||||||
| 27986 | 3' | -60.8 | NC_005886.2 | + | 30765 | 0.66 | 0.351827 |
|
Target: 5'- aGCACgCGGaCGUGCaccaauAGCCGUCa -3' miRNA: 3'- aCGUGgGCC-GCGCGacucu-UCGGCAG- -5' |
|||||||
| 27986 | 3' | -60.8 | NC_005886.2 | + | 46987 | 0.66 | 0.346889 |
|
Target: 5'- cGCGCUaaaucuugaucuuggUGGUGCgaucGCUGAGAAGCUGg- -3' miRNA: 3'- aCGUGG---------------GCCGCG----CGACUCUUCGGCag -5' |
|||||||
| 27986 | 3' | -60.8 | NC_005886.2 | + | 11820 | 0.68 | 0.256026 |
|
Target: 5'- cGCAUcgUCGGCGCgGCUuaaGAcGAAGCCGUa -3' miRNA: 3'- aCGUG--GGCCGCG-CGA---CU-CUUCGGCAg -5' |
|||||||
| 27986 | 3' | -60.8 | NC_005886.2 | + | 35460 | 1.09 | 0.000194 |
|
Target: 5'- uUGCACCCGGCGCGCUGAGAAGCCGUCg -3' miRNA: 3'- -ACGUGGGCCGCGCGACUCUUCGGCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home