Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27987 | 5' | -55.1 | NC_005886.2 | + | 7260 | 0.66 | 0.678681 |
Target: 5'- aCGCCGGCUgcgcuaccgucaUCGGCcggauuuuuagauggGAUGAUugGCg-- -3' miRNA: 3'- -GCGGCUGA------------AGCCG---------------UUACUGugCGgua -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 5417 | 0.66 | 0.674225 |
Target: 5'- -aUCGACUUCGGU--UGACccguuccaguucGCGCCAg -3' miRNA: 3'- gcGGCUGAAGCCGuuACUG------------UGCGGUa -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 4710 | 0.66 | 0.674225 |
Target: 5'- aGCCGACgcCGGCuuGUGACGaaCCGa -3' miRNA: 3'- gCGGCUGaaGCCGu-UACUGUgcGGUa -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 13522 | 0.66 | 0.629427 |
Target: 5'- gGCCGACUUCGaucCAGUucGCACGCUg- -3' miRNA: 3'- gCGGCUGAAGCc--GUUAc-UGUGCGGua -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 29579 | 0.67 | 0.595814 |
Target: 5'- gGCCGGCUUUGGUGAgcgcaucgGACugGUUg- -3' miRNA: 3'- gCGGCUGAAGCCGUUa-------CUGugCGGua -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 40314 | 0.68 | 0.540546 |
Target: 5'- uGaCGGCUUCGGCAAguUGGCGugcguuauaguCGCCAg -3' miRNA: 3'- gCgGCUGAAGCCGUU--ACUGU-----------GCGGUa -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 31590 | 0.68 | 0.529683 |
Target: 5'- uCGCUGACg--GGUGAUGACACGaUCGUa -3' miRNA: 3'- -GCGGCUGaagCCGUUACUGUGC-GGUA- -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 37957 | 0.68 | 0.508207 |
Target: 5'- cCGuaGAUUUccCGGCGGUGguGCACGCCAUu -3' miRNA: 3'- -GCggCUGAA--GCCGUUAC--UGUGCGGUA- -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 5615 | 0.69 | 0.497606 |
Target: 5'- gGCCGauacgaucGCUUCgGGCGuUGACAUGCCc- -3' miRNA: 3'- gCGGC--------UGAAG-CCGUuACUGUGCGGua -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 16563 | 0.7 | 0.446217 |
Target: 5'- aCGCCGACUgaacUCGGCuacucgGugGCGCa-- -3' miRNA: 3'- -GCGGCUGA----AGCCGuua---CugUGCGgua -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 14547 | 0.71 | 0.388674 |
Target: 5'- cCGgCGACgcguacgaGGCGAUGaACACGCCGUu -3' miRNA: 3'- -GCgGCUGaag-----CCGUUAC-UGUGCGGUA- -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 37079 | 0.73 | 0.289123 |
Target: 5'- gCGUCuACUUCGGCAA--GCGCGCCGa -3' miRNA: 3'- -GCGGcUGAAGCCGUUacUGUGCGGUa -5' |
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27987 | 5' | -55.1 | NC_005886.2 | + | 35921 | 0.97 | 0.005883 |
Target: 5'- cCGCCGAC-UCGGCAAUGACACGCCAUc -3' miRNA: 3'- -GCGGCUGaAGCCGUUACUGUGCGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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