miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27988	5'	-52.7	NC_005886.2	+	39333	0.66	0.809346
	Target:  5'- cGCUGCGAcaucuGCUGaGugaucuugucgcGCAACGUCGcggcuuccguUGCACc -3' miRNA:   3'- -CGACGUU-----UGAC-C------------CGUUGCAGC----------ACGUG- -5'
27988	5'	-52.7	NC_005886.2	+	36249	0.66	0.768575
	Target:  5'- gGCgGCGGcAC-GGGCGGCGgCGgcgGCACg -3' miRNA:   3'- -CGaCGUU-UGaCCCGUUGCaGCa--CGUG- -5'
27988	5'	-52.7	NC_005886.2	+	13450	0.66	0.757972
	Target:  5'- aGCgUGCGAACUGGauCGAaGUCGgccgGCGCg -3' miRNA:   3'- -CG-ACGUUUGACCc-GUUgCAGCa---CGUG- -5'
27988	5'	-52.7	NC_005886.2	+	13433	0.67	0.714298
	Target:  5'- cGCUGCAAgccgugacgGCUGGuGCGAUuUCGUuccuguucggcgGCGCa -3' miRNA:   3'- -CGACGUU---------UGACC-CGUUGcAGCA------------CGUG- -5'
27988	5'	-52.7	NC_005886.2	+	16017	0.67	0.714298
	Target:  5'- -aUGCAca-UGGGCGAgGaUGUGCGCg -3' miRNA:   3'- cgACGUuugACCCGUUgCaGCACGUG- -5'
27988	5'	-52.7	NC_005886.2	+	41587	0.67	0.703129
	Target:  5'- -gUGCAggUU-GGCAACGUCGgcgucaGCGCc -3' miRNA:   3'- cgACGUuuGAcCCGUUGCAGCa-----CGUG- -5'
27988	5'	-52.7	NC_005886.2	+	19791	0.68	0.657829
	Target:  5'- aGCgugGCAAACcGGGaCAACuuccguuuuGUCGUuGCACg -3' miRNA:   3'- -CGa--CGUUUGaCCC-GUUG---------CAGCA-CGUG- -5'
27988	5'	-52.7	NC_005886.2	+	6800	0.7	0.555453
	Target:  5'- cGCUGCAucaAAC-GGGCGGCGgaacagGUGCAa -3' miRNA:   3'- -CGACGU---UUGaCCCGUUGCag----CACGUg -5'
27988	5'	-52.7	NC_005886.2	+	43755	0.7	0.522173
	Target:  5'- gGCcGUGAcGCUGGcGCAGCGUUGgGCGCg -3' miRNA:   3'- -CGaCGUU-UGACC-CGUUGCAGCaCGUG- -5'
27988	5'	-52.7	NC_005886.2	+	36448	1.11	0.000982
	Target:  5'- uGCUGCAAACUGGGCAACGUCGUGCACc -3' miRNA:   3'- -CGACGUUUGACCCGUUGCAGCACGUG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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