miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27990 5' -54.9 NC_005886.2 + 27926 0.66 0.70598
Target:  5'- aCGUCGUGuGGCGGCAagcCCGUGUUa- -3'
miRNA:   3'- aGCGGCAC-UUGUCGUgu-GGCGCAAgc -5'
27990 5' -54.9 NC_005886.2 + 42810 0.67 0.673158
Target:  5'- aUCGCaGUucGCAcGCGCAUCGCaGUUCGu -3'
miRNA:   3'- -AGCGgCAcuUGU-CGUGUGGCG-CAAGC- -5'
27990 5' -54.9 NC_005886.2 + 18801 0.67 0.673158
Target:  5'- aCGCCG-GGugAGUACaACgGCGUgCGg -3'
miRNA:   3'- aGCGGCaCUugUCGUG-UGgCGCAaGC- -5'
27990 5' -54.9 NC_005886.2 + 15087 0.67 0.662124
Target:  5'- aUUGCCGc--GCAGCAaGCCGCGUggUCu -3'
miRNA:   3'- -AGCGGCacuUGUCGUgUGGCGCA--AGc -5'
27990 5' -54.9 NC_005886.2 + 13620 0.67 0.617809
Target:  5'- aCGCgGauugcGAACgAGCGCGCCGCGaUCu -3'
miRNA:   3'- aGCGgCa----CUUG-UCGUGUGGCGCaAGc -5'
27990 5' -54.9 NC_005886.2 + 3807 0.67 0.617808
Target:  5'- aUCGaCCGU-AACaAGCGCGCCaGCGUUUc -3'
miRNA:   3'- -AGC-GGCAcUUG-UCGUGUGG-CGCAAGc -5'
27990 5' -54.9 NC_005886.2 + 43140 0.68 0.606737
Target:  5'- gCGUCGacGAAgAGCGCGCCGCGc--- -3'
miRNA:   3'- aGCGGCa-CUUgUCGUGUGGCGCaagc -5'
27990 5' -54.9 NC_005886.2 + 41562 0.69 0.519685
Target:  5'- gCGCCG-GAcguuGCGGC-CGgUGCGUUCGg -3'
miRNA:   3'- aGCGGCaCU----UGUCGuGUgGCGCAAGC- -5'
27990 5' -54.9 NC_005886.2 + 34358 0.69 0.50701
Target:  5'- aUGCCGUcacgcacggcacgGAugaucGCAGCGCgaccgaauagauaGCCGCGUUCGu -3'
miRNA:   3'- aGCGGCA-------------CU-----UGUCGUG-------------UGGCGCAAGC- -5'
27990 5' -54.9 NC_005886.2 + 17549 0.7 0.467794
Target:  5'- aCGCCGgguGCAGCACuGCCGggcgGUUCGa -3'
miRNA:   3'- aGCGGCacuUGUCGUG-UGGCg---CAAGC- -5'
27990 5' -54.9 NC_005886.2 + 21322 0.71 0.409261
Target:  5'- uUUGCUGUGGuaGCGGUACGCCGcCGUa-- -3'
miRNA:   3'- -AGCGGCACU--UGUCGUGUGGC-GCAagc -5'
27990 5' -54.9 NC_005886.2 + 12432 0.72 0.381757
Target:  5'- cUUGCC--GAGCAGCAgACCGCGaccUUCGa -3'
miRNA:   3'- -AGCGGcaCUUGUCGUgUGGCGC---AAGC- -5'
27990 5' -54.9 NC_005886.2 + 34988 0.73 0.314662
Target:  5'- aUCGaCUG-GAAUAGCACugCGCGUUUu -3'
miRNA:   3'- -AGC-GGCaCUUGUCGUGugGCGCAAGc -5'
27990 5' -54.9 NC_005886.2 + 45824 0.73 0.314662
Target:  5'- aUGCaaagCGUGAACAGCuACGuuGCGUUCa -3'
miRNA:   3'- aGCG----GCACUUGUCG-UGUggCGCAAGc -5'
27990 5' -54.9 NC_005886.2 + 12916 0.73 0.299344
Target:  5'- uUCGUCGUGGcaaGCAGCACuuGCgGCGaUCGg -3'
miRNA:   3'- -AGCGGCACU---UGUCGUG--UGgCGCaAGC- -5'
27990 5' -54.9 NC_005886.2 + 23186 0.76 0.213698
Target:  5'- aCGCaCGUGAACGGCuCGCCGuCGUggCGg -3'
miRNA:   3'- aGCG-GCACUUGUCGuGUGGC-GCAa-GC- -5'
27990 5' -54.9 NC_005886.2 + 40529 1.1 0.000857
Target:  5'- gUCGCCGUGAACAGCACACCGCGUUCGa -3'
miRNA:   3'- -AGCGGCACUUGUCGUGUGGCGCAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.