miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27991 3' -55.8 NC_005886.2 + 16240 0.66 0.659001
Target:  5'- aACGGGCGcuucaacaucGCGcc-GGCCGUUGCGUu- -3'
miRNA:   3'- -UGCCCGC----------UGCuucUUGGCAACGCGcu -5'
27991 3' -55.8 NC_005886.2 + 46285 0.66 0.64801
Target:  5'- uAUGGGCGguACGAGGAAgaagcGCGCGAa -3'
miRNA:   3'- -UGCCCGC--UGCUUCUUggcaaCGCGCU- -5'
27991 3' -55.8 NC_005886.2 + 36580 0.67 0.625995
Target:  5'- gGCGGG-GACGGgucguucgaaGGAAUCGgaGCGCa- -3'
miRNA:   3'- -UGCCCgCUGCU----------UCUUGGCaaCGCGcu -5'
27991 3' -55.8 NC_005886.2 + 26992 0.67 0.602904
Target:  5'- cCGGGCGgcacuacGCGAccGGcAACC-UUGCGCGGc -3'
miRNA:   3'- uGCCCGC-------UGCU--UC-UUGGcAACGCGCU- -5'
27991 3' -55.8 NC_005886.2 + 19414 0.67 0.593037
Target:  5'- aACGGGCuaucgucCGuuGAuGCCGUUGCGCa- -3'
miRNA:   3'- -UGCCCGcu-----GCuuCU-UGGCAACGCGcu -5'
27991 3' -55.8 NC_005886.2 + 43137 0.68 0.560374
Target:  5'- cGCGcGuCGACGAAGAGCgCGccGCGCGu -3'
miRNA:   3'- -UGCcC-GCUGCUUCUUG-GCaaCGCGCu -5'
27991 3' -55.8 NC_005886.2 + 42176 0.68 0.51766
Target:  5'- aACGGugcGCGACGAGGGaacugcguuucACUGgUGCGCGu -3'
miRNA:   3'- -UGCC---CGCUGCUUCU-----------UGGCaACGCGCu -5'
27991 3' -55.8 NC_005886.2 + 332 0.69 0.496788
Target:  5'- uCGGGCGAauccUGAAGAAUCGacgGCGaCGGu -3'
miRNA:   3'- uGCCCGCU----GCUUCUUGGCaa-CGC-GCU- -5'
27991 3' -55.8 NC_005886.2 + 22110 0.7 0.426088
Target:  5'- cGCGGGagaCGACGAAaAGCCGUucacgcgUGCGCa- -3'
miRNA:   3'- -UGCCC---GCUGCUUcUUGGCA-------ACGCGcu -5'
27991 3' -55.8 NC_005886.2 + 31585 0.7 0.398974
Target:  5'- gACGGGUGAUGAcacGAUCGUaGCGCGu -3'
miRNA:   3'- -UGCCCGCUGCUuc-UUGGCAaCGCGCu -5'
27991 3' -55.8 NC_005886.2 + 38654 0.76 0.19244
Target:  5'- cGCGGGCGACGuuGAGAAucaccucguCCGUcgGCGCGu -3'
miRNA:   3'- -UGCCCGCUGC--UUCUU---------GGCAa-CGCGCu -5'
27991 3' -55.8 NC_005886.2 + 39831 0.79 0.117252
Target:  5'- aGCGGGUGACGAAauuCCGcUGCGCGGc -3'
miRNA:   3'- -UGCCCGCUGCUUcuuGGCaACGCGCU- -5'
27991 3' -55.8 NC_005886.2 + 41211 1.08 0.000921
Target:  5'- cACGGGCGACGAAGAACCGUUGCGCGAu -3'
miRNA:   3'- -UGCCCGCUGCUUCUUGGCAACGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.