miRNA: 3'- -GgCUGCAACgGUu--GGACGUguUGUUC- -5'
miRNA: 3'- gGCugCAACGGuu-----GGACGUgUUGUUc -5'
miRNA: 3'- -GGCUGCAA---CGGU--UGGAcGUGUUGUuc -5'
miRNA: 3'- gGCUGCA-------ACGGUUG-GACGUGUUgUuc -5'
miRNA: 3'- -GGC---UGCAACGG--UUGGACGUGUUguuc -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 27992 | 5' | -50.3 | NC_005886.2 | + | 5631 | 0.66 | 0.929343 |
|
Target: 5'- uCgGGCGUUGaCAugcCCUGCAauGCAAGg -3' miRNA: 3'- -GgCUGCAACgGUu--GGACGUguUGUUC- -5' |
|||||||
| 27992 | 5' | -50.3 | NC_005886.2 | + | 4968 | 0.66 | 0.923346 |
|
Target: 5'- gCGugGUUGCCuuauuguCUUGCAaAGCAGu -3' miRNA: 3'- gGCugCAACGGuu-----GGACGUgUUGUUc -5' |
|||||||
| 27992 | 5' | -50.3 | NC_005886.2 | + | 2103 | 0.66 | 0.929343 |
|
Target: 5'- uCUGACGUUaucGCCGgcACCU-CGCAACGc- -3' miRNA: 3'- -GGCUGCAA---CGGU--UGGAcGUGUUGUuc -5' |
|||||||
| 27992 | 5' | -50.3 | NC_005886.2 | + | 1374 | 0.67 | 0.863912 |
|
Target: 5'- aCGACGUauacuauUGCUGACgCUGCACGGgAu- -3' miRNA: 3'- gGCUGCA-------ACGGUUG-GACGUGUUgUuc -5' |
|||||||
| 27992 | 5' | -50.3 | NC_005886.2 | + | 606 | 0.72 | 0.611556 |
|
Target: 5'- gUCGcauACGUUGCCugAACCUGCGCAAg--- -3' miRNA: 3'- -GGC---UGCAACGG--UUGGACGUGUUguuc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home