miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27992 5' -50.3 NC_005886.2 + 606 0.72 0.611556
Target:  5'- gUCGcauACGUUGCCugAACCUGCGCAAg--- -3'
miRNA:   3'- -GGC---UGCAACGG--UUGGACGUGUUguuc -5'
27992 5' -50.3 NC_005886.2 + 1374 0.67 0.863912
Target:  5'- aCGACGUauacuauUGCUGACgCUGCACGGgAu- -3'
miRNA:   3'- gGCUGCA-------ACGGUUG-GACGUGUUgUuc -5'
27992 5' -50.3 NC_005886.2 + 2103 0.66 0.929343
Target:  5'- uCUGACGUUaucGCCGgcACCU-CGCAACGc- -3'
miRNA:   3'- -GGCUGCAA---CGGU--UGGAcGUGUUGUuc -5'
27992 5' -50.3 NC_005886.2 + 4968 0.66 0.923346
Target:  5'- gCGugGUUGCCuuauuguCUUGCAaAGCAGu -3'
miRNA:   3'- gGCugCAACGGuu-----GGACGUgUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 5631 0.66 0.929343
Target:  5'- uCgGGCGUUGaCAugcCCUGCAauGCAAGg -3'
miRNA:   3'- -GgCUGCAACgGUu--GGACGUguUGUUC- -5'
27992 5' -50.3 NC_005886.2 + 10325 0.66 0.917047
Target:  5'- aCGAUGUcuUCAACuUUGCGCAGCAAc -3'
miRNA:   3'- gGCUGCAacGGUUG-GACGUGUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 13433 0.68 0.828946
Target:  5'- aCCGgcuucACGUUGCCAGCgUGCG-AACuGGa -3'
miRNA:   3'- -GGC-----UGCAACGGUUGgACGUgUUGuUC- -5'
27992 5' -50.3 NC_005886.2 + 15094 0.7 0.747275
Target:  5'- aCCGACGaUUGCC-----GCGCAGCAAGc -3'
miRNA:   3'- -GGCUGC-AACGGuuggaCGUGUUGUUC- -5'
27992 5' -50.3 NC_005886.2 + 17964 0.67 0.881118
Target:  5'- cCCgGACGgcuuguccUUGCCGuCCUGCACaAGCAc- -3'
miRNA:   3'- -GG-CUGC--------AACGGUuGGACGUG-UUGUuc -5'
27992 5' -50.3 NC_005886.2 + 19522 0.66 0.929343
Target:  5'- aUCG-CGUacugcuucucUGCCGACCUgaugGCACGugGGGc -3'
miRNA:   3'- -GGCuGCA----------ACGGUUGGA----CGUGUugUUC- -5'
27992 5' -50.3 NC_005886.2 + 19553 0.66 0.910449
Target:  5'- gCUGGCGUUGUguACgUcGCAgCGACGAGc -3'
miRNA:   3'- -GGCUGCAACGguUGgA-CGU-GUUGUUC- -5'
27992 5' -50.3 NC_005886.2 + 24519 0.71 0.680326
Target:  5'- gCGGCGUcacugGCCGGCgcgcucgcgCUGCACAACAc- -3'
miRNA:   3'- gGCUGCAa----CGGUUG---------GACGUGUUGUuc -5'
27992 5' -50.3 NC_005886.2 + 33038 0.68 0.809647
Target:  5'- gCGACGUUcuCUGAUCUGUACGACGGu -3'
miRNA:   3'- gGCUGCAAc-GGUUGGACGUGUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 34040 0.68 0.809647
Target:  5'- aCGACGgugaUGCCGACCUGauccCGACu-- -3'
miRNA:   3'- gGCUGCa---ACGGUUGGACgu--GUUGuuc -5'
27992 5' -50.3 NC_005886.2 + 34235 0.7 0.714197
Target:  5'- gUCGGCGgaacUUGCCGGCCaguggaccauUGCACAACu-- -3'
miRNA:   3'- -GGCUGC----AACGGUUGG----------ACGUGUUGuuc -5'
27992 5' -50.3 NC_005886.2 + 35887 0.66 0.923346
Target:  5'- uCCGACGUUGaugacagugaaCAGCCUGCGauuaugccCGAUGAa -3'
miRNA:   3'- -GGCUGCAACg----------GUUGGACGU--------GUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 36516 0.68 0.828946
Target:  5'- aCGACGUUGcCCAGuuUGCAgCAgaucgcggACAAGu -3'
miRNA:   3'- gGCUGCAAC-GGUUggACGU-GU--------UGUUC- -5'
27992 5' -50.3 NC_005886.2 + 36974 0.66 0.910449
Target:  5'- gUCGACG--GCCAGCUUGaACAACGu- -3'
miRNA:   3'- -GGCUGCaaCGGUUGGACgUGUUGUuc -5'
27992 5' -50.3 NC_005886.2 + 37031 0.69 0.768712
Target:  5'- gCCGACGaguccUGCCGucacGCCUGCcgcuuCAGCGAu -3'
miRNA:   3'- -GGCUGCa----ACGGU----UGGACGu----GUUGUUc -5'
27992 5' -50.3 NC_005886.2 + 37047 0.67 0.856179
Target:  5'- aCGACGUUGuUCAAgCUGgCcgucgACAACAAGg -3'
miRNA:   3'- gGCUGCAAC-GGUUgGAC-G-----UGUUGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.