miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27993 5' -57.3 NC_005886.2 + 22548 0.66 0.543013
Target:  5'- gUUGCUGGacgUUCGCGACGCAcaaCCGa -3'
miRNA:   3'- gAACGACCg--GAGCGUUGUGUcg-GGCg -5'
27993 5' -57.3 NC_005886.2 + 46823 0.66 0.543012
Target:  5'- gCUUGCcGGCgcaCUCGUcGCGCAGaaaaUCGCg -3'
miRNA:   3'- -GAACGaCCG---GAGCGuUGUGUCg---GGCG- -5'
27993 5' -57.3 NC_005886.2 + 17903 0.66 0.53227
Target:  5'- gUUGUcGGCgaauccCGCaAACACGGCUCGCg -3'
miRNA:   3'- gAACGaCCGga----GCG-UUGUGUCGGGCG- -5'
27993 5' -57.3 NC_005886.2 + 37034 0.66 0.53227
Target:  5'- --aGCUGGCCgUCGaCAACAaggacgugaAGCugauCCGCg -3'
miRNA:   3'- gaaCGACCGG-AGC-GUUGUg--------UCG----GGCG- -5'
27993 5' -57.3 NC_005886.2 + 37215 0.66 0.511024
Target:  5'- gCUUGCaGGgUUUGCAACGCcaaCCGCg -3'
miRNA:   3'- -GAACGaCCgGAGCGUUGUGucgGGCG- -5'
27993 5' -57.3 NC_005886.2 + 32015 0.66 0.511024
Target:  5'- -gUGCUGcGCUcgcaccggaUCGCAACGCGcGCauuaCGCa -3'
miRNA:   3'- gaACGAC-CGG---------AGCGUUGUGU-CGg---GCG- -5'
27993 5' -57.3 NC_005886.2 + 19324 0.67 0.497405
Target:  5'- ---aCUGGCCgauauugCGCAACGgcaucaacggacgaUAGCCCGUu -3'
miRNA:   3'- gaacGACCGGa------GCGUUGU--------------GUCGGGCG- -5'
27993 5' -57.3 NC_005886.2 + 21294 0.67 0.479846
Target:  5'- -gUGCUuaaGGUCgaCGCGGCGCAgguGCUCGCg -3'
miRNA:   3'- gaACGA---CCGGa-GCGUUGUGU---CGGGCG- -5'
27993 5' -57.3 NC_005886.2 + 38590 0.69 0.373673
Target:  5'- gUUGCcGGCCgcgcCGCAcuugcugauccaaGCGCGGCCgGUg -3'
miRNA:   3'- gAACGaCCGGa---GCGU-------------UGUGUCGGgCG- -5'
27993 5' -57.3 NC_005886.2 + 1226 0.69 0.339512
Target:  5'- --gGCUucGGCCcucacuaUCGCGACGCAGuuCCUGCa -3'
miRNA:   3'- gaaCGA--CCGG-------AGCGUUGUGUC--GGGCG- -5'
27993 5' -57.3 NC_005886.2 + 38810 0.71 0.271848
Target:  5'- gCUUGCgcaGuGCC-CGCAGCGCAGCggUCGCc -3'
miRNA:   3'- -GAACGa--C-CGGaGCGUUGUGUCG--GGCG- -5'
27993 5' -57.3 NC_005886.2 + 20296 0.72 0.251614
Target:  5'- aCUUgGUUGGCCg-GCGACGCAuCCUGCa -3'
miRNA:   3'- -GAA-CGACCGGagCGUUGUGUcGGGCG- -5'
27993 5' -57.3 NC_005886.2 + 42008 1.1 0.000373
Target:  5'- uCUUGCUGGCCUCGCAACACAGCCCGCc -3'
miRNA:   3'- -GAACGACCGGAGCGUUGUGUCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.