Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27994 | 5' | -62.2 | NC_005886.2 | + | 1170 | 0.66 | 0.358303 |
Target: 5'- gGCCGaaGCCCCCGcCGCcacgaGCGCaaGCAc- -3' miRNA: 3'- -CGGC--UGGGGGCaGCGa----CGCGg-CGUug -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 5542 | 0.67 | 0.282883 |
Target: 5'- cGUCGAUuaCCaCCGUCGC-GC-CCGUAACg -3' miRNA: 3'- -CGGCUG--GG-GGCAGCGaCGcGGCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 13301 | 0.68 | 0.269397 |
Target: 5'- cGCCGAaaacgaaaUgCCCGauaccgugacagUCGUUGCGCCGCcgAACa -3' miRNA: 3'- -CGGCU--------GgGGGC------------AGCGACGCGGCG--UUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 13450 | 0.66 | 0.350161 |
Target: 5'- aGCCGccGCgCUCGcaaCGCUGCaaGCCGUGACg -3' miRNA: 3'- -CGGC--UGgGGGCa--GCGACG--CGGCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 16754 | 0.67 | 0.304106 |
Target: 5'- uGCCGGCgUaCGUCGCaGUGCCG-AACg -3' miRNA: 3'- -CGGCUGgGgGCAGCGaCGCGGCgUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 19560 | 0.66 | 0.350161 |
Target: 5'- uCCGGCCgCUGgCGUUGUguacGUCGCAGCg -3' miRNA: 3'- cGGCUGGgGGCaGCGACG----CGGCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 22344 | 0.68 | 0.256433 |
Target: 5'- -gCGACCgCCCGUgaCaCUcGCGCCGCAAUc -3' miRNA: 3'- cgGCUGG-GGGCA--GcGA-CGCGGCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 24687 | 0.68 | 0.256433 |
Target: 5'- gGCCGcuagaaGCCCCgCGUcCGC-GCGCaaCGCGGCg -3' miRNA: 3'- -CGGC------UGGGG-GCA-GCGaCGCG--GCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 29797 | 0.66 | 0.333495 |
Target: 5'- gGCCGGCCCuuGcgcuucggccccuUUGCUGCgaGUCGCGc- -3' miRNA: 3'- -CGGCUGGGggC-------------AGCGACG--CGGCGUug -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 36299 | 0.69 | 0.22626 |
Target: 5'- cGCCGauGCCgCCCGUgcCGCccGUGCCGCcGCc -3' miRNA: 3'- -CGGC--UGG-GGGCA--GCGa-CGCGGCGuUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 36347 | 0.69 | 0.22626 |
Target: 5'- cGCCGauGCCgCCCGUgcCGCccGUGCCGCcGCc -3' miRNA: 3'- -CGGC--UGG-GGGCA--GCGa-CGCGGCGuUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 38735 | 0.67 | 0.296185 |
Target: 5'- cGCCGACggacgaggugauuCUCaaCGUCGCccGCGCCGCAu- -3' miRNA: 3'- -CGGCUG-------------GGG--GCAGCGa-CGCGGCGUug -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 39016 | 0.69 | 0.204335 |
Target: 5'- cGCUGcauCCCCUGUCGagcaGC-CCGCAGCa -3' miRNA: 3'- -CGGCu--GGGGGCAGCga--CGcGGCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 41861 | 0.69 | 0.220598 |
Target: 5'- cGCCGACUcaaCCCGUCauggucgcaauGcCUGCGCCG-GACg -3' miRNA: 3'- -CGGCUGG---GGGCAG-----------C-GACGCGGCgUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 42454 | 0.66 | 0.350161 |
Target: 5'- cGCCGcACUCCgGguggaugCGCgGUGCgGCAACc -3' miRNA: 3'- -CGGC-UGGGGgCa------GCGaCGCGgCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 43842 | 0.66 | 0.358303 |
Target: 5'- cGUCGACUgcugcgcgCCCaaCGCUGCGCCaGCGucACg -3' miRNA: 3'- -CGGCUGG--------GGGcaGCGACGCGG-CGU--UG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 44106 | 1.1 | 0.00016 |
Target: 5'- uGCCGACCCCCGUCGCUGCGCCGCAACu -3' miRNA: 3'- -CGGCUGGGGGCAGCGACGCGGCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 44206 | 0.67 | 0.289125 |
Target: 5'- aGCCGGCCgCUuucugCGUCggcacgaGUUGCGgCGCAGCg -3' miRNA: 3'- -CGGCUGG-GG-----GCAG-------CGACGCgGCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 45546 | 0.66 | 0.342151 |
Target: 5'- cGCCGGCCUUCuUUGC--CGCUGCGGCu -3' miRNA: 3'- -CGGCUGGGGGcAGCGacGCGGCGUUG- -5' |
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27994 | 5' | -62.2 | NC_005886.2 | + | 47242 | 0.67 | 0.289825 |
Target: 5'- uGCCGACCguucgguuuUCCGU-GUUGUGCaGCGACa -3' miRNA: 3'- -CGGCUGG---------GGGCAgCGACGCGgCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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