Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27995 | 3' | -55.9 | NC_005886.2 | + | 46795 | 1.08 | 0.000797 |
Target: 5'- gCAACCCGGCAAGCGCAGUCGAACGCAu -3' miRNA: 3'- -GUUGGGCCGUUCGCGUCAGCUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 17794 | 0.71 | 0.352521 |
Target: 5'- aCGGCaagaCGGUAGGCGCAGgcgguaCGGGCGUg -3' miRNA: 3'- -GUUGg---GCCGUUCGCGUCa-----GCUUGCGu -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 16262 | 0.71 | 0.353375 |
Target: 5'- gUAACCCGGCAGGCGguacaauacaaGGGCGCAc -3' miRNA: 3'- -GUUGGGCCGUUCGCgucag------CUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 24417 | 0.71 | 0.360253 |
Target: 5'- gAAgCCGGCAAcaaaacccguguuGUGCAGcgCGAGCGCGc -3' miRNA: 3'- gUUgGGCCGUU-------------CGCGUCa-GCUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 31946 | 0.7 | 0.367224 |
Target: 5'- gCGAUCCGGUgcGAGCGCagcacccgucugaaGGUCGAugAUGCAg -3' miRNA: 3'- -GUUGGGCCG--UUCGCG--------------UCAGCU--UGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 7177 | 0.7 | 0.387778 |
Target: 5'- gCAGCCCGuGCAAcGUGC-GUCGAuCGCc -3' miRNA: 3'- -GUUGGGC-CGUU-CGCGuCAGCUuGCGu -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 16554 | 0.7 | 0.406254 |
Target: 5'- gAACUCGGCuacucgguGGCGCAGUacauGCGCGa -3' miRNA: 3'- gUUGGGCCGu-------UCGCGUCAgcu-UGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 21002 | 0.7 | 0.406254 |
Target: 5'- gAACCCGGUAGGCaCAGUgcCGAGCa-- -3' miRNA: 3'- gUUGGGCCGUUCGcGUCA--GCUUGcgu -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 35140 | 0.69 | 0.425274 |
Target: 5'- aCAACCCGGCu-GCGgGGcgCGcACGCu -3' miRNA: 3'- -GUUGGGCCGuuCGCgUCa-GCuUGCGu -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 18290 | 0.69 | 0.454772 |
Target: 5'- gCAACCCGuGCAAGaCGCA-UCcGACGUAa -3' miRNA: 3'- -GUUGGGC-CGUUC-GCGUcAGcUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 26818 | 0.68 | 0.47504 |
Target: 5'- gGACCUGaucGC-GGCGUucGUCGAACGCAu -3' miRNA: 3'- gUUGGGC---CGuUCGCGu-CAGCUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 19672 | 0.68 | 0.47504 |
Target: 5'- aUAACCUucgGGCAAGCGgaAGacCGGACGCAu -3' miRNA: 3'- -GUUGGG---CCGUUCGCg-UCa-GCUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 28047 | 0.68 | 0.506256 |
Target: 5'- --uCUCGGUu-GCGUcgaAGUCGAGCGCGa -3' miRNA: 3'- guuGGGCCGuuCGCG---UCAGCUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 43847 | 0.67 | 0.538317 |
Target: 5'- -cGCaCCGGCAGGCaugggcgcaccgGCAGgcaUGGGCGCAc -3' miRNA: 3'- guUG-GGCCGUUCG------------CGUCa--GCUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 37072 | 0.67 | 0.571043 |
Target: 5'- --cUUCGGCAAGCGC-GcCGAacuGCGCAc -3' miRNA: 3'- guuGGGCCGUUCGCGuCaGCU---UGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 4086 | 0.67 | 0.571043 |
Target: 5'- ----aUGGCAAGCuGCGGgaaCGGGCGCAg -3' miRNA: 3'- guuggGCCGUUCG-CGUCa--GCUUGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 46881 | 0.66 | 0.59313 |
Target: 5'- -uGCgCCGGCAAGCauGCGuUCGAcuGCGCu -3' miRNA: 3'- guUG-GGCCGUUCG--CGUcAGCU--UGCGu -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 39863 | 0.66 | 0.604228 |
Target: 5'- aAAUUCGaCGGGCGCgGGUCGAagucGCGCAa -3' miRNA: 3'- gUUGGGCcGUUCGCG-UCAGCU----UGCGU- -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 43632 | 0.66 | 0.615351 |
Target: 5'- aAGCCCGGUuucuucGUGCGuGUCGGugGUc -3' miRNA: 3'- gUUGGGCCGuu----CGCGU-CAGCUugCGu -5' |
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27995 | 3' | -55.9 | NC_005886.2 | + | 20838 | 0.66 | 0.625375 |
Target: 5'- aAGCuuGcGUucgaaauGGGCGCGGUUGAugGCGu -3' miRNA: 3'- gUUGggC-CG-------UUCGCGUCAGCUugCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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