miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27995 5' -52 NC_005886.2 + 9669 0.66 0.857795
Target:  5'- uGGUGCACgCGguaUCGCGCAauggcuugguUCGCg -3'
miRNA:   3'- -CCGCGUGaGC---AGCGCGUcuuuu-----AGCG- -5'
27995 5' -52 NC_005886.2 + 16549 0.66 0.85437
Target:  5'- cGGC-UACUCgGUgGCGCAGuacaugcgcGAGUCGUa -3'
miRNA:   3'- -CCGcGUGAG-CAgCGCGUCu--------UUUAGCG- -5'
27995 5' -52 NC_005886.2 + 28521 0.66 0.85437
Target:  5'- uGCGCAUcauUCGcUUGCGCAGGc-AUCGa -3'
miRNA:   3'- cCGCGUG---AGC-AGCGCGUCUuuUAGCg -5'
27995 5' -52 NC_005886.2 + 31074 0.66 0.84564
Target:  5'- uGGCGUGCUaacaaaGCGCAuGAGAccgaucggcGUCGCg -3'
miRNA:   3'- -CCGCGUGAgcag--CGCGU-CUUU---------UAGCG- -5'
27995 5' -52 NC_005886.2 + 515 0.66 0.843865
Target:  5'- cGcCGCAUcugCGUCGCGCugcaacuuAUCGCg -3'
miRNA:   3'- cC-GCGUGa--GCAGCGCGucuuu---UAGCG- -5'
27995 5' -52 NC_005886.2 + 27715 0.66 0.836673
Target:  5'- gGGCGCAUcuuaCGgUGCGCcccGAGuGUCGCa -3'
miRNA:   3'- -CCGCGUGa---GCaGCGCGu--CUUuUAGCG- -5'
27995 5' -52 NC_005886.2 + 31706 0.67 0.827481
Target:  5'- cGCGCAgUUCGUCG-GCAGGcgGUCc- -3'
miRNA:   3'- cCGCGU-GAGCAGCgCGUCUuuUAGcg -5'
27995 5' -52 NC_005886.2 + 26550 0.67 0.827481
Target:  5'- -cCGCGCUCGUgaaucgucgcgaCGCGCuGAAAcUCGa -3'
miRNA:   3'- ccGCGUGAGCA------------GCGCGuCUUUuAGCg -5'
27995 5' -52 NC_005886.2 + 24786 0.67 0.827481
Target:  5'- uGGCGCaucaauaaACUCGccgcguugCGCGCGGA----CGCg -3'
miRNA:   3'- -CCGCG--------UGAGCa-------GCGCGUCUuuuaGCG- -5'
27995 5' -52 NC_005886.2 + 43766 0.67 0.827481
Target:  5'- uGGCGCAg-CGUugggCGCGCAGc-AGUCGa -3'
miRNA:   3'- -CCGCGUgaGCA----GCGCGUCuuUUAGCg -5'
27995 5' -52 NC_005886.2 + 40777 0.67 0.808458
Target:  5'- cGGCGCGaugaUGUUGUGCGGAAucccugcaCGCg -3'
miRNA:   3'- -CCGCGUga--GCAGCGCGUCUUuua-----GCG- -5'
27995 5' -52 NC_005886.2 + 4144 0.67 0.806511
Target:  5'- gGGCGCGCUuaCGUUG-GCAGGGuucaaauuaccuGUCGUu -3'
miRNA:   3'- -CCGCGUGA--GCAGCgCGUCUUu-----------UAGCG- -5'
27995 5' -52 NC_005886.2 + 43207 0.67 0.798649
Target:  5'- cGGCGCGCucuUCGUCGaCGCg------CGCa -3'
miRNA:   3'- -CCGCGUG---AGCAGC-GCGucuuuuaGCG- -5'
27995 5' -52 NC_005886.2 + 1126 0.67 0.798649
Target:  5'- cGGuCGCcUUCuuuuUCGUGCAGGAAcugcGUCGCg -3'
miRNA:   3'- -CC-GCGuGAGc---AGCGCGUCUUU----UAGCG- -5'
27995 5' -52 NC_005886.2 + 44934 0.67 0.798649
Target:  5'- cGCGCAgUCGaUCggauGCGCAGA---UUGCg -3'
miRNA:   3'- cCGCGUgAGC-AG----CGCGUCUuuuAGCG- -5'
27995 5' -52 NC_005886.2 + 13325 0.67 0.788657
Target:  5'- cGUGaCAgUCGUUGCGCcgccgaacaGGAacgAAAUCGCa -3'
miRNA:   3'- cCGC-GUgAGCAGCGCG---------UCU---UUUAGCG- -5'
27995 5' -52 NC_005886.2 + 46744 0.67 0.788657
Target:  5'- cGGCGgGCUgGUggaacaCGC-CGGAcgGUCGCg -3'
miRNA:   3'- -CCGCgUGAgCA------GCGcGUCUuuUAGCG- -5'
27995 5' -52 NC_005886.2 + 28010 0.67 0.788657
Target:  5'- cGUGCGCUCGUUGgGgAGu---UCGUa -3'
miRNA:   3'- cCGCGUGAGCAGCgCgUCuuuuAGCG- -5'
27995 5' -52 NC_005886.2 + 1068 0.68 0.778494
Target:  5'- uGGaUGCACaagcCGUCGCggguGCAGAaacggaugucGAAUCGCu -3'
miRNA:   3'- -CC-GCGUGa---GCAGCG----CGUCU----------UUUAGCG- -5'
27995 5' -52 NC_005886.2 + 1545 0.68 0.768171
Target:  5'- --gGCGCUCGUCGgGCcgauauGGGGcAUCGUg -3'
miRNA:   3'- ccgCGUGAGCAGCgCG------UCUUuUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.