Results 81 - 94 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 3' | -60.2 | NC_005887.1 | + | 36680 | 0.69 | 0.250752 |
Target: 5'- uUGCCAgaauuCGguGUcggcuuccaucugcUUCCGCGUCACGUCg -3' miRNA: 3'- uGCGGU-----GCguCA--------------AGGGCGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 37401 | 0.67 | 0.308597 |
Target: 5'- gGCGCUGCGCGGUcgcgacugCCUGCacGCCAgGUg -3' miRNA: 3'- -UGCGGUGCGUCAa-------GGGCG--CGGUgCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 37575 | 0.71 | 0.184717 |
Target: 5'- uCGCCggcugGCGuCAGcUUCCCGCGCU-CGUCg -3' miRNA: 3'- uGCGG-----UGC-GUC-AAGGGCGCGGuGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 37726 | 0.69 | 0.233961 |
Target: 5'- cGCGCCG-GCGGccaCCgGCGCCGCGg- -3' miRNA: 3'- -UGCGGUgCGUCaa-GGgCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 38010 | 0.74 | 0.101045 |
Target: 5'- cGCGCCgGCGUcgaucAGUUCCUGCGgCAUGUCc -3' miRNA: 3'- -UGCGG-UGCG-----UCAAGGGCGCgGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 38421 | 0.67 | 0.331876 |
Target: 5'- cGCGCCGCGgAuGUUggUCUuCGCCAUGUCg -3' miRNA: 3'- -UGCGGUGCgU-CAA--GGGcGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 40125 | 0.66 | 0.391083 |
Target: 5'- gACGCCuacagcgUGCGGUgcgcgCUgCGCGCCGCGcUCg -3' miRNA: 3'- -UGCGGu------GCGUCAa----GG-GCGCGGUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 40654 | 0.67 | 0.339918 |
Target: 5'- cAUGCCGCGCAGcuugcgCUCGUGCUcgggGCGaUCg -3' miRNA: 3'- -UGCGGUGCGUCaa----GGGCGCGG----UGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 40864 | 0.69 | 0.246305 |
Target: 5'- cGCGCCGCGCgAGcgCCgCaCGCCgucgGCGUCg -3' miRNA: 3'- -UGCGGUGCG-UCaaGG-GcGCGG----UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 41124 | 0.68 | 0.301119 |
Target: 5'- aGCGCCGCGCAGcgCCCGC-CagauaAgGUg -3' miRNA: 3'- -UGCGGUGCGUCaaGGGCGcGg----UgCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 41191 | 0.7 | 0.220987 |
Target: 5'- cCGCCugGCugcauccgaCCCGCGCguCGUCg -3' miRNA: 3'- uGCGGugCGucaa-----GGGCGCGguGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 41984 | 0.66 | 0.364881 |
Target: 5'- uCGCCuaucaGCAGcacggCCUGCGgcCCACGUCg -3' miRNA: 3'- uGCGGug---CGUCaa---GGGCGC--GGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 42070 | 1.08 | 0.000263 |
Target: 5'- cACGCCACGCAGUUCCCGCGCCACGUCu -3' miRNA: 3'- -UGCGGUGCGUCAAGGGCGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 42087 | 0.68 | 0.265828 |
Target: 5'- cUGUCGCGUGGggCgCGaUGCCGCGUCg -3' miRNA: 3'- uGCGGUGCGUCaaGgGC-GCGGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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