miRNA display CGI


Results 81 - 94 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 392 0.66 0.391083
Target:  5'- cGCGCCGCGCAcGcaCCaCGCGagCACGcCg -3'
miRNA:   3'- -UGCGGUGCGU-CaaGG-GCGCg-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 16237 0.67 0.339918
Target:  5'- cGCGCCGUGCAGgacaUCCUGCucgacGCCAUGa- -3'
miRNA:   3'- -UGCGGUGCGUCa---AGGGCG-----CGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 38421 0.67 0.331876
Target:  5'- cGCGCCGCGgAuGUUggUCUuCGCCAUGUCg -3'
miRNA:   3'- -UGCGGUGCgU-CAA--GGGcGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 15919 0.68 0.286584
Target:  5'- cGCGCggcugcaGCGCGcGUUCCCGCGCgGCc-- -3'
miRNA:   3'- -UGCGg------UGCGU-CAAGGGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 29255 0.68 0.286584
Target:  5'- cACGCCcUGCAGcacUCCgcgaucgaGCGCCGCGUUc -3'
miRNA:   3'- -UGCGGuGCGUCa--AGGg-------CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 27362 0.68 0.293781
Target:  5'- cACGCCugcggccuGCGCGG--CCUGCGCgGCGUa -3'
miRNA:   3'- -UGCGG--------UGCGUCaaGGGCGCGgUGCAg -5'
27996 3' -60.2 NC_005887.1 + 29971 0.68 0.293781
Target:  5'- gACGUUguuuGCGCGGUgcugCUCGgccUGCCACGUCa -3'
miRNA:   3'- -UGCGG----UGCGUCAa---GGGC---GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 41124 0.68 0.301119
Target:  5'- aGCGCCGCGCAGcgCCCGC-CagauaAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCaaGGGCGcGg----UgCAg -5'
27996 3' -60.2 NC_005887.1 + 26745 0.67 0.308597
Target:  5'- cUGCUGCGCGacgCCCguGCGCUGCGUCu -3'
miRNA:   3'- uGCGGUGCGUcaaGGG--CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 12388 0.67 0.308597
Target:  5'- cGCGCgGCGguGUUCgCgGCGCUcgacacCGUCg -3'
miRNA:   3'- -UGCGgUGCguCAAG-GgCGCGGu-----GCAG- -5'
27996 3' -60.2 NC_005887.1 + 15113 0.67 0.316216
Target:  5'- cGCGCgAUGCAGU---UGCGCCGCGa- -3'
miRNA:   3'- -UGCGgUGCGUCAaggGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 1252 0.67 0.323975
Target:  5'- -gGCCGucUGCAGUUCCUcUGCCuCGUCc -3'
miRNA:   3'- ugCGGU--GCGUCAAGGGcGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 8631 0.67 0.323975
Target:  5'- uCGCCGCgaucgaGCAGaUCgaccgCCGCGCCACGa- -3'
miRNA:   3'- uGCGGUG------CGUCaAG-----GGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 25152 0.66 0.400086
Target:  5'- uGCGCgGCGCAacaUUgCCGCgugcgGCCGCGUUc -3'
miRNA:   3'- -UGCGgUGCGUc--AAgGGCG-----CGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.