miRNA display CGI


Results 81 - 94 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 862 0.66 0.39918
Target:  5'- gUGCCcguggACGCGuggCCCGCGCCGCcggacgaGUCa -3'
miRNA:   3'- uGCGG-----UGCGUcaaGGGCGCGGUG-------CAG- -5'
27996 3' -60.2 NC_005887.1 + 32549 0.66 0.364881
Target:  5'- gUGCCAgGCuuucaccgcGUUCUCGCGCCaguGCGUg -3'
miRNA:   3'- uGCGGUgCGu--------CAAGGGCGCGG---UGCAg -5'
27996 3' -60.2 NC_005887.1 + 14647 0.66 0.364881
Target:  5'- -aGCCgGCGCGGUgcugCCCGuCGCCGguUCg -3'
miRNA:   3'- ugCGG-UGCGUCAa---GGGC-GCGGUgcAG- -5'
27996 3' -60.2 NC_005887.1 + 17590 0.66 0.356421
Target:  5'- cACGCC-CGUcaaUCCCGCGCuCGCG-Cg -3'
miRNA:   3'- -UGCGGuGCGucaAGGGCGCG-GUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 5574 0.68 0.286584
Target:  5'- uCGCCgACGCuga-CCUGCGCCAguuCGUCg -3'
miRNA:   3'- uGCGG-UGCGucaaGGGCGCGGU---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 14006 0.68 0.301119
Target:  5'- uGCGCCGCGCGccUCCgcaaccgccggCGCGCCGCc-- -3'
miRNA:   3'- -UGCGGUGCGUcaAGG-----------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 15692 0.68 0.301119
Target:  5'- cCGCCGCGCGGccggaugaUUCCGCcGCCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa-------AGGGCG-CGG-UGCAg -5'
27996 3' -60.2 NC_005887.1 + 37401 0.67 0.308597
Target:  5'- gGCGCUGCGCGGUcgcgacugCCUGCacGCCAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCAa-------GGGCG--CGGUgCAg -5'
27996 3' -60.2 NC_005887.1 + 15388 0.67 0.308597
Target:  5'- gACGCCGCGCuGaUCgCGCGCgGgcagcggauCGUCg -3'
miRNA:   3'- -UGCGGUGCGuCaAGgGCGCGgU---------GCAG- -5'
27996 3' -60.2 NC_005887.1 + 14940 0.67 0.316216
Target:  5'- cACGCCGCGCGcugCCguacgaCGCGCCGCa-- -3'
miRNA:   3'- -UGCGGUGCGUcaaGG------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 17291 0.67 0.348099
Target:  5'- gGCGCCGCGCgcgcaaacgccGGUUCggCGCaCCGCGUg -3'
miRNA:   3'- -UGCGGUGCG-----------UCAAGg-GCGcGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 278 0.66 0.356421
Target:  5'- gACGUgGCGCGGgaaCUGCGUgGCGUg -3'
miRNA:   3'- -UGCGgUGCGUCaagGGCGCGgUGCAg -5'
27996 3' -60.2 NC_005887.1 + 27344 0.66 0.356421
Target:  5'- uGCGCCACGCGcagcggCGCGCagacgaGCGUCg -3'
miRNA:   3'- -UGCGGUGCGUcaagg-GCGCGg-----UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 7382 0.66 0.400086
Target:  5'- aACGCCGCGUucAGcUCgCCGacgacgauCGCCACGgUCg -3'
miRNA:   3'- -UGCGGUGCG--UCaAG-GGC--------GCGGUGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.