Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 3' | -60.2 | NC_005887.1 | + | 29971 | 0.68 | 0.293781 |
Target: 5'- gACGUUguuuGCGCGGUgcugCUCGgccUGCCACGUCa -3' miRNA: 3'- -UGCGG----UGCGUCAa---GGGC---GCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 27362 | 0.68 | 0.293781 |
Target: 5'- cACGCCugcggccuGCGCGG--CCUGCGCgGCGUa -3' miRNA: 3'- -UGCGG--------UGCGUCaaGGGCGCGgUGCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 5574 | 0.68 | 0.286584 |
Target: 5'- uCGCCgACGCuga-CCUGCGCCAguuCGUCg -3' miRNA: 3'- uGCGG-UGCGucaaGGGCGCGGU---GCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 29255 | 0.68 | 0.286584 |
Target: 5'- cACGCCcUGCAGcacUCCgcgaucgaGCGCCGCGUUc -3' miRNA: 3'- -UGCGGuGCGUCa--AGGg-------CGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 15919 | 0.68 | 0.286584 |
Target: 5'- cGCGCggcugcaGCGCGcGUUCCCGCGCgGCc-- -3' miRNA: 3'- -UGCGg------UGCGU-CAAGGGCGCGgUGcag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 8570 | 0.68 | 0.286584 |
Target: 5'- cGCGCUugGUGGaagCCCGgcaCGCCGCGcCa -3' miRNA: 3'- -UGCGGugCGUCaa-GGGC---GCGGUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 873 | 0.68 | 0.283745 |
Target: 5'- gUGCCAUGCGGgaugaugagcagaUCCuCGCGCgGCGUg -3' miRNA: 3'- uGCGGUGCGUCa------------AGG-GCGCGgUGCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 25419 | 0.68 | 0.279527 |
Target: 5'- aGCGCuCACGCA----UCGCGCC-CGUCg -3' miRNA: 3'- -UGCG-GUGCGUcaagGGCGCGGuGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 32768 | 0.68 | 0.279527 |
Target: 5'- cGCGCCAUGCAGccggCUCGUGCgCAgGaUCg -3' miRNA: 3'- -UGCGGUGCGUCaa--GGGCGCG-GUgC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 20952 | 0.68 | 0.278829 |
Target: 5'- uUGCCAuuugcuCGCuGUUCCCGCgcuggcgcuuggcGCCACGcUCg -3' miRNA: 3'- uGCGGU------GCGuCAAGGGCG-------------CGGUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 30183 | 0.68 | 0.278829 |
Target: 5'- aACGCC-UGCAGcuuccacUUCUCGCcggccagccacGCCGCGUCg -3' miRNA: 3'- -UGCGGuGCGUC-------AAGGGCG-----------CGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 26080 | 0.68 | 0.272608 |
Target: 5'- cGCGUCA-GCGG--CCCGCGCgGCGUUu -3' miRNA: 3'- -UGCGGUgCGUCaaGGGCGCGgUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 29700 | 0.68 | 0.272608 |
Target: 5'- cUGCaCGCGCAGccaCUCGcCGUCGCGUCg -3' miRNA: 3'- uGCG-GUGCGUCaa-GGGC-GCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 10264 | 0.68 | 0.265828 |
Target: 5'- cCGCCGCcaggucaacggGCAGacCgUGCGCUACGUCg -3' miRNA: 3'- uGCGGUG-----------CGUCaaGgGCGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 42087 | 0.68 | 0.265828 |
Target: 5'- cUGUCGCGUGGggCgCGaUGCCGCGUCg -3' miRNA: 3'- uGCGGUGCGUCaaGgGC-GCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 29055 | 0.68 | 0.265828 |
Target: 5'- aACGCCugGCcgaucugguucAGcgCCUGCGCCuuugUGUCg -3' miRNA: 3'- -UGCGGugCG-----------UCaaGGGCGCGGu---GCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 418 | 0.68 | 0.265828 |
Target: 5'- cGCGCCGCGCcg--CCCGCuguuGCUGCGcUCg -3' miRNA: 3'- -UGCGGUGCGucaaGGGCG----CGGUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 12686 | 0.68 | 0.265828 |
Target: 5'- aGCGCCA-GCuGUgcuacCUCGCGCCGCG-Cg -3' miRNA: 3'- -UGCGGUgCGuCAa----GGGCGCGGUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 36680 | 0.69 | 0.250752 |
Target: 5'- uUGCCAgaauuCGguGUcggcuuccaucugcUUCCGCGUCACGUCg -3' miRNA: 3'- uGCGGU-----GCguCA--------------AGGGCGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 40864 | 0.69 | 0.246305 |
Target: 5'- cGCGCCGCGCgAGcgCCgCaCGCCgucgGCGUCg -3' miRNA: 3'- -UGCGGUGCG-UCaaGG-GcGCGG----UGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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