miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 42109 1.09 0.000459
Target:  5'- gUCGAGGCGCCGCAGGUCAAACAGCACc -3'
miRNA:   3'- -AGCUCCGCGGCGUCCAGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 41541 0.67 0.457819
Target:  5'- gCGAGGCGCucggcgcgcaCGCGaaGUCAGcCAGCGCc -3'
miRNA:   3'- aGCUCCGCG----------GCGUc-CAGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 40731 0.67 0.457819
Target:  5'- uUCGAGGuCGCCGCccgcGUCGAGgcgaucgccguUGGCGCg -3'
miRNA:   3'- -AGCUCC-GCGGCGuc--CAGUUU-----------GUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 39902 0.73 0.217495
Target:  5'- gUCGAcGGCGCCGUAGcgcgcgagguGUCAuucguCGGCGCg -3'
miRNA:   3'- -AGCU-CCGCGGCGUC----------CAGUuu---GUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 39197 0.67 0.467997
Target:  5'- gUCGAGGCGCgGCA--UCAggUAGUc- -3'
miRNA:   3'- -AGCUCCGCGgCGUccAGUuuGUCGug -5'
27996 5' -56.7 NC_005887.1 + 37205 0.71 0.261847
Target:  5'- gCGGcGCGCCGac-GUCGGGCAGCGCg -3'
miRNA:   3'- aGCUcCGCGGCgucCAGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 36968 0.73 0.206059
Target:  5'- gUCGucucGGCGUCGCgcGGGUCGAGCucgccggcgAGCACg -3'
miRNA:   3'- -AGCu---CCGCGGCG--UCCAGUUUG---------UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 35462 0.68 0.428017
Target:  5'- cCGAGGCGuUCGUu-GUCGAGCAGguCg -3'
miRNA:   3'- aGCUCCGC-GGCGucCAGUUUGUCguG- -5'
27996 5' -56.7 NC_005887.1 + 35380 0.79 0.080199
Target:  5'- cCGAGGCGCagcuuuucaCGCAGGUuccgguucauguacCAGACGGCGCg -3'
miRNA:   3'- aGCUCCGCG---------GCGUCCA--------------GUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 35221 0.67 0.464932
Target:  5'- gUUGAacGGCGCCGCAGcgccgccccgccucGUUAGACcacGCGCg -3'
miRNA:   3'- -AGCU--CCGCGGCGUC--------------CAGUUUGu--CGUG- -5'
27996 5' -56.7 NC_005887.1 + 34983 0.66 0.509812
Target:  5'- aCGcGGCGuuGUcgucGGUCu-GCAGCGCg -3'
miRNA:   3'- aGCuCCGCggCGu---CCAGuuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 34935 0.66 0.55311
Target:  5'- aCGAGGCgGCgGCGGGUgcGACcguGGCGa -3'
miRNA:   3'- aGCUCCG-CGgCGUCCAguUUG---UCGUg -5'
27996 5' -56.7 NC_005887.1 + 34845 0.67 0.488695
Target:  5'- cUCGGGGUcguGCCGCcgaGGGUguaguucaagcgCAggUAGCGCu -3'
miRNA:   3'- -AGCUCCG---CGGCG---UCCA------------GUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 33708 0.69 0.372023
Target:  5'- uUCGuGGCGCgGC-GGUCGAucugcucgaucGCGGCGa -3'
miRNA:   3'- -AGCuCCGCGgCGuCCAGUU-----------UGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 32837 0.78 0.093586
Target:  5'- gUGAuGGcCGCCguGCAGGUCAAGCGGCAUc -3'
miRNA:   3'- aGCU-CC-GCGG--CGUCCAGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 32796 0.67 0.488695
Target:  5'- aUCGGcGcGCGCCGCuucacGGgcaCGAACAGCGg -3'
miRNA:   3'- -AGCU-C-CGCGGCGu----CCa--GUUUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 32290 0.7 0.297846
Target:  5'- aCGGGGCGaUCGuCGGGcCAGcCGGCGCg -3'
miRNA:   3'- aGCUCCGC-GGC-GUCCaGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 31954 0.67 0.457819
Target:  5'- uUCGAGGUGCCcgaggccgGCGauaGUCGAcguCGGCACg -3'
miRNA:   3'- -AGCUCCGCGG--------CGUc--CAGUUu--GUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 31210 0.68 0.408799
Target:  5'- uUCG-GGCGCCGCGuG-Cuu-CAGCACg -3'
miRNA:   3'- -AGCuCCGCGGCGUcCaGuuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 29847 0.66 0.520513
Target:  5'- uUUGAGGaUGUCGCAGG-CGAugaacacguccuGCGGCAg -3'
miRNA:   3'- -AGCUCC-GCGGCGUCCaGUU------------UGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.