Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27997 | 3' | -53.7 | NC_005887.1 | + | 40911 | 0.99 | 0.005431 |
Target: 5'- aCAUGAU-CGGAACGCCUUCCAGCAGCu -3' miRNA: 3'- -GUACUAgGCCUUGCGGAAGGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 16093 | 0.77 | 0.178736 |
Target: 5'- aCAUGG-CCGGuggugaAACGCUUUCCGGUGGCg -3' miRNA: 3'- -GUACUaGGCC------UUGCGGAAGGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 36405 | 0.74 | 0.278926 |
Target: 5'- gGUGGUCUGGuucauuugcgcacCGCCUUCCGcGCGGCc -3' miRNA: 3'- gUACUAGGCCuu-----------GCGGAAGGU-CGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 985 | 0.73 | 0.338781 |
Target: 5'- --cGGUCUGcucGAACGCUUcCCGGCGGCg -3' miRNA: 3'- guaCUAGGC---CUUGCGGAaGGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 32274 | 0.7 | 0.468446 |
Target: 5'- gCAUGAUCCGGuccacacggggcgauCGUCgggCCAGcCGGCg -3' miRNA: 3'- -GUACUAGGCCuu-------------GCGGaa-GGUC-GUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 33488 | 0.7 | 0.48205 |
Target: 5'- aCGUaAUCCGGAuCGCCgUUCAGCAuccGCg -3' miRNA: 3'- -GUAcUAGGCCUuGCGGaAGGUCGU---CG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 37557 | 0.7 | 0.492644 |
Target: 5'- --aGAUCCGcGAGCacgGCCUcgCCGGCuGGCg -3' miRNA: 3'- guaCUAGGC-CUUG---CGGAa-GGUCG-UCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 37830 | 0.69 | 0.525037 |
Target: 5'- --cGA-CCGGGACGCCgccguagUCGGCgAGCa -3' miRNA: 3'- guaCUaGGCCUUGCGGaa-----GGUCG-UCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 9827 | 0.69 | 0.547075 |
Target: 5'- aCGUGG-CCGGAuAUGCCgUUCgAGCAGa -3' miRNA: 3'- -GUACUaGGCCU-UGCGG-AAGgUCGUCg -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 13002 | 0.69 | 0.558205 |
Target: 5'- --cGAcCCGGAccagGCGgCUUCCgugaAGCAGCu -3' miRNA: 3'- guaCUaGGCCU----UGCgGAAGG----UCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 11043 | 0.69 | 0.558205 |
Target: 5'- aCGUGAccaCCGGuGCGCCgaugCCGGUcgAGCu -3' miRNA: 3'- -GUACUa--GGCCuUGCGGaa--GGUCG--UCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 24150 | 0.69 | 0.561557 |
Target: 5'- --aGAUCCGGGuucagcacggcgaAcuCGCCUUCCucgcgaaucaugccgAGCAGCu -3' miRNA: 3'- guaCUAGGCCU-------------U--GCGGAAGG---------------UCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 18104 | 0.68 | 0.580645 |
Target: 5'- cCGUGGcugcugCCGGcACGUgg-CCAGCAGCg -3' miRNA: 3'- -GUACUa-----GGCCuUGCGgaaGGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 28921 | 0.68 | 0.580645 |
Target: 5'- -cUGAg-CGGuGCGCCgcucgUCgCAGCAGCg -3' miRNA: 3'- guACUagGCCuUGCGGa----AG-GUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 36973 | 0.68 | 0.591938 |
Target: 5'- --cGcgCUGGcuuCGCCUUCgAGCAGUc -3' miRNA: 3'- guaCuaGGCCuu-GCGGAAGgUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 22355 | 0.68 | 0.603268 |
Target: 5'- gCAUGAugaugcagucUCCGGucgcAUGCgCUUCCAGCAa- -3' miRNA: 3'- -GUACU----------AGGCCu---UGCG-GAAGGUCGUcg -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 1041 | 0.67 | 0.625996 |
Target: 5'- cCGUGAUgCGGugUuCCUUgcCCGGCGGCa -3' miRNA: 3'- -GUACUAgGCCuuGcGGAA--GGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 34671 | 0.67 | 0.625996 |
Target: 5'- ----uUCCGGAucCGCCacguugUCgAGCAGCa -3' miRNA: 3'- guacuAGGCCUu-GCGGa-----AGgUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 20825 | 0.67 | 0.635099 |
Target: 5'- uCGUGAauuucccggcagCCGGcgucguuGCGCCgauugCCGGCGGCg -3' miRNA: 3'- -GUACUa-----------GGCCu------UGCGGaa---GGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 28731 | 0.67 | 0.637374 |
Target: 5'- aGUGcggCCGccgcGCGCCgcgcugCCAGCAGCg -3' miRNA: 3'- gUACua-GGCcu--UGCGGaa----GGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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