miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27997 3' -53.7 NC_005887.1 + 985 0.73 0.338781
Target:  5'- --cGGUCUGcucGAACGCUUcCCGGCGGCg -3'
miRNA:   3'- guaCUAGGC---CUUGCGGAaGGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 1041 0.67 0.625996
Target:  5'- cCGUGAUgCGGugUuCCUUgcCCGGCGGCa -3'
miRNA:   3'- -GUACUAgGCCuuGcGGAA--GGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 2169 0.67 0.682722
Target:  5'- gCAUGGacUUCGGccuGACGCCggCCgcggugaucgGGCAGCg -3'
miRNA:   3'- -GUACU--AGGCC---UUGCGGaaGG----------UCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 2529 0.67 0.660104
Target:  5'- --cGGcCCGucGCGCUUuaUCCAGCAGUg -3'
miRNA:   3'- guaCUaGGCcuUGCGGA--AGGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 2851 0.66 0.72724
Target:  5'- gCGUGAacuUCCaGuucgucaGCCUggCCAGCGGCa -3'
miRNA:   3'- -GUACU---AGGcCuug----CGGAa-GGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 9827 0.69 0.547075
Target:  5'- aCGUGG-CCGGAuAUGCCgUUCgAGCAGa -3'
miRNA:   3'- -GUACUaGGCCU-UGCGG-AAGgUCGUCg -5'
27997 3' -53.7 NC_005887.1 + 11043 0.69 0.558205
Target:  5'- aCGUGAccaCCGGuGCGCCgaugCCGGUcgAGCu -3'
miRNA:   3'- -GUACUa--GGCCuUGCGGaa--GGUCG--UCG- -5'
27997 3' -53.7 NC_005887.1 + 13002 0.69 0.558205
Target:  5'- --cGAcCCGGAccagGCGgCUUCCgugaAGCAGCu -3'
miRNA:   3'- guaCUaGGCCU----UGCgGAAGG----UCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 16093 0.77 0.178736
Target:  5'- aCAUGG-CCGGuggugaAACGCUUUCCGGUGGCg -3'
miRNA:   3'- -GUACUaGGCC------UUGCGGAAGGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 17873 0.66 0.735975
Target:  5'- aCGUGGgcCCGGAAccugucCGCCgcgacgaugaagUUCGGCGGCg -3'
miRNA:   3'- -GUACUa-GGCCUU------GCGGa-----------AGGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 18104 0.68 0.580645
Target:  5'- cCGUGGcugcugCCGGcACGUgg-CCAGCAGCg -3'
miRNA:   3'- -GUACUa-----GGCCuUGCGgaaGGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 20825 0.67 0.635099
Target:  5'- uCGUGAauuucccggcagCCGGcgucguuGCGCCgauugCCGGCGGCg -3'
miRNA:   3'- -GUACUa-----------GGCCu------UGCGGaa---GGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 22355 0.68 0.603268
Target:  5'- gCAUGAugaugcagucUCCGGucgcAUGCgCUUCCAGCAa- -3'
miRNA:   3'- -GUACU----------AGGCCu---UGCG-GAAGGUCGUcg -5'
27997 3' -53.7 NC_005887.1 + 24150 0.69 0.561557
Target:  5'- --aGAUCCGGGuucagcacggcgaAcuCGCCUUCCucgcgaaucaugccgAGCAGCu -3'
miRNA:   3'- guaCUAGGCCU-------------U--GCGGAAGG---------------UCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 24949 0.67 0.660104
Target:  5'- gCGUGcgCgCGGGcCGCCUUgCGcGCGGCc -3'
miRNA:   3'- -GUACuaG-GCCUuGCGGAAgGU-CGUCG- -5'
27997 3' -53.7 NC_005887.1 + 26334 0.66 0.738148
Target:  5'- cCGUGG-CCGG--CGCUggCCGGguGCg -3'
miRNA:   3'- -GUACUaGGCCuuGCGGaaGGUCguCG- -5'
27997 3' -53.7 NC_005887.1 + 26573 0.67 0.648747
Target:  5'- --cGAUCUGcuucuGCGCCUUCgCGGCcGCg -3'
miRNA:   3'- guaCUAGGCcu---UGCGGAAG-GUCGuCG- -5'
27997 3' -53.7 NC_005887.1 + 28731 0.67 0.637374
Target:  5'- aGUGcggCCGccgcGCGCCgcgcugCCAGCAGCg -3'
miRNA:   3'- gUACua-GGCcu--UGCGGaa----GGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 28921 0.68 0.580645
Target:  5'- -cUGAg-CGGuGCGCCgcucgUCgCAGCAGCg -3'
miRNA:   3'- guACUagGCCuUGCGGa----AG-GUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 30135 0.66 0.69396
Target:  5'- gCGUGAaaUCCGGcGCGCCcggc-GCGGCg -3'
miRNA:   3'- -GUACU--AGGCCuUGCGGaagguCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.