miRNA display CGI

Results 21 - 33 of 33 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27997	3'	-53.7	NC_005887.1	+	28921	0.68	0.580645
	Target:  5'- -cUGAg-CGGuGCGCCgcucgUCgCAGCAGCg -3' miRNA:   3'- guACUagGCCuUGCGGa----AG-GUCGUCG- -5'
27997	3'	-53.7	NC_005887.1	+	24150	0.69	0.561557
	Target:  5'- --aGAUCCGGGuucagcacggcgaAcuCGCCUUCCucgcgaaucaugccgAGCAGCu -3' miRNA:   3'- guaCUAGGCCU-------------U--GCGGAAGG---------------UCGUCG- -5'
27997	3'	-53.7	NC_005887.1	+	13002	0.69	0.558205
	Target:  5'- --cGAcCCGGAccagGCGgCUUCCgugaAGCAGCu -3' miRNA:   3'- guaCUaGGCCU----UGCgGAAGG----UCGUCG- -5'
27997	3'	-53.7	NC_005887.1	+	11043	0.69	0.558205
	Target:  5'- aCGUGAccaCCGGuGCGCCgaugCCGGUcgAGCu -3' miRNA:   3'- -GUACUa--GGCCuUGCGGaa--GGUCG--UCG- -5'
27997	3'	-53.7	NC_005887.1	+	9827	0.69	0.547075
	Target:  5'- aCGUGG-CCGGAuAUGCCgUUCgAGCAGa -3' miRNA:   3'- -GUACUaGGCCU-UGCGG-AAGgUCGUCg -5'
27997	3'	-53.7	NC_005887.1	+	37830	0.69	0.525037
	Target:  5'- --cGA-CCGGGACGCCgccguagUCGGCgAGCa -3' miRNA:   3'- guaCUaGGCCUUGCGGaa-----GGUCG-UCG- -5'
27997	3'	-53.7	NC_005887.1	+	37557	0.7	0.492644
	Target:  5'- --aGAUCCGcGAGCacgGCCUcgCCGGCuGGCg -3' miRNA:   3'- guaCUAGGC-CUUG---CGGAa-GGUCG-UCG- -5'
27997	3'	-53.7	NC_005887.1	+	33488	0.7	0.48205
	Target:  5'- aCGUaAUCCGGAuCGCCgUUCAGCAuccGCg -3' miRNA:   3'- -GUAcUAGGCCUuGCGGaAGGUCGU---CG- -5'
27997	3'	-53.7	NC_005887.1	+	32274	0.7	0.468446
	Target:  5'- gCAUGAUCCGGuccacacggggcgauCGUCgggCCAGcCGGCg -3' miRNA:   3'- -GUACUAGGCCuu-------------GCGGaa-GGUC-GUCG- -5'
27997	3'	-53.7	NC_005887.1	+	985	0.73	0.338781
	Target:  5'- --cGGUCUGcucGAACGCUUcCCGGCGGCg -3' miRNA:   3'- guaCUAGGC---CUUGCGGAaGGUCGUCG- -5'
27997	3'	-53.7	NC_005887.1	+	36405	0.74	0.278926
	Target:  5'- gGUGGUCUGGuucauuugcgcacCGCCUUCCGcGCGGCc -3' miRNA:   3'- gUACUAGGCCuu-----------GCGGAAGGU-CGUCG- -5'
27997	3'	-53.7	NC_005887.1	+	16093	0.77	0.178736
	Target:  5'- aCAUGG-CCGGuggugaAACGCUUUCCGGUGGCg -3' miRNA:   3'- -GUACUaGGCC------UUGCGGAAGGUCGUCG- -5'
27997	3'	-53.7	NC_005887.1	+	40911	0.99	0.005431
	Target:  5'- aCAUGAU-CGGAACGCCUUCCAGCAGCu -3' miRNA:   3'- -GUACUAgGCCUUGCGGAAGGUCGUCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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