miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27997 5' -63 NC_005887.1 + 40947 1.03 0.00024
Target:  5'- cUUGCCGCUGCCGAGCGGGCCCAUGAUg -3'
miRNA:   3'- -AACGGCGACGGCUCGCCCGGGUACUA- -5'
27997 5' -63 NC_005887.1 + 41610 0.75 0.050067
Target:  5'- gUGCgGCgGCCG-GCGcGGCCCGUGAg -3'
miRNA:   3'- aACGgCGaCGGCuCGC-CCGGGUACUa -5'
27997 5' -63 NC_005887.1 + 14189 0.72 0.081728
Target:  5'- aUUGCacgCGCUGUCGGGCGcGGCCUcgGAc -3'
miRNA:   3'- -AACG---GCGACGGCUCGC-CCGGGuaCUa -5'
27997 5' -63 NC_005887.1 + 19123 0.7 0.12483
Target:  5'- -cGCCGCUcgcguGCCGucGGCGuGGCCCuUGAa -3'
miRNA:   3'- aaCGGCGA-----CGGC--UCGC-CCGGGuACUa -5'
27997 5' -63 NC_005887.1 + 21818 0.69 0.143387
Target:  5'- -cGgCGCUGCCGGGCGcGCCgaAUGAa -3'
miRNA:   3'- aaCgGCGACGGCUCGCcCGGg-UACUa -5'
27997 5' -63 NC_005887.1 + 4585 0.69 0.131239
Target:  5'- aUGCCGCgcaacgacgacgGCaaguuGGGCGGGCUCGUGGa -3'
miRNA:   3'- aACGGCGa-----------CGg----CUCGCCCGGGUACUa -5'
27997 5' -63 NC_005887.1 + 16529 0.69 0.13197
Target:  5'- -cGCCGCcggcGCCGAGUGGGCgCGUc-- -3'
miRNA:   3'- aaCGGCGa---CGGCUCGCCCGgGUAcua -5'
27997 5' -63 NC_005887.1 + 24545 0.68 0.151493
Target:  5'- -gGCCGCaccuucgGCCGGGC--GCCCAUGAUc -3'
miRNA:   3'- aaCGGCGa------CGGCUCGccCGGGUACUA- -5'
27997 5' -63 NC_005887.1 + 31045 0.68 0.164434
Target:  5'- -cGCuCGCUGCCGAGCcGGCCg----- -3'
miRNA:   3'- aaCG-GCGACGGCUCGcCCGGguacua -5'
27997 5' -63 NC_005887.1 + 35061 0.67 0.188216
Target:  5'- -gGUCGCUGCCGucgucGGCGGGCgCGa--- -3'
miRNA:   3'- aaCGGCGACGGC-----UCGCCCGgGUacua -5'
27997 5' -63 NC_005887.1 + 34522 0.67 0.188216
Target:  5'- cUGUCGCUGCgaccaCGGGCuuuuGGGCCCGUa-- -3'
miRNA:   3'- aACGGCGACG-----GCUCG----CCCGGGUAcua -5'
27997 5' -63 NC_005887.1 + 32805 0.66 0.214973
Target:  5'- -cGCCGCUucacggGCaCGAacaGCGGGCCgaCGUGAUg -3'
miRNA:   3'- aaCGGCGA------CG-GCU---CGCCCGG--GUACUA- -5'
27997 5' -63 NC_005887.1 + 26860 0.66 0.22656
Target:  5'- -aGCCGUUGCCGc-CGGGCaCCGacUGGa -3'
miRNA:   3'- aaCGGCGACGGCucGCCCG-GGU--ACUa -5'
27997 5' -63 NC_005887.1 + 25535 0.66 0.238671
Target:  5'- -cGUCGCcGCCGAGCGGuGCgCGUu-- -3'
miRNA:   3'- aaCGGCGaCGGCUCGCC-CGgGUAcua -5'
27997 5' -63 NC_005887.1 + 25888 0.66 0.220702
Target:  5'- cUGCCGCgcgGUCGAGCGcauGCCCGc--- -3'
miRNA:   3'- aACGGCGa--CGGCUCGCc--CGGGUacua -5'
27997 5' -63 NC_005887.1 + 36904 0.66 0.220702
Target:  5'- aUGCgGCaggagUGCC-AGCGGGCgCGUGGUc -3'
miRNA:   3'- aACGgCG-----ACGGcUCGCCCGgGUACUA- -5'
27997 5' -63 NC_005887.1 + 32318 0.66 0.209373
Target:  5'- aUGCCGCUGuUCGugccAGCGcGGCCgcgCGUGAUg -3'
miRNA:   3'- aACGGCGAC-GGC----UCGC-CCGG---GUACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.