miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27998 3' -52.1 NC_005887.1 + 18898 0.66 0.812144
Target:  5'- cCGGGCUUccgguggaagcggcgGGAUGGCGGGcGGcUGCGa -3'
miRNA:   3'- aGCUCGAG---------------CUUACUGUCCaUC-ACGCa -5'
27998 3' -52.1 NC_005887.1 + 6356 0.66 0.798207
Target:  5'- -aGAGCUCGAcUGcACAGGUAacggacaacUGCGg -3'
miRNA:   3'- agCUCGAGCUuAC-UGUCCAUc--------ACGCa -5'
27998 3' -52.1 NC_005887.1 + 19465 0.66 0.798207
Target:  5'- cUCGGGUUCG-AUGACucuGGUcaacaAGUGCu- -3'
miRNA:   3'- -AGCUCGAGCuUACUGu--CCA-----UCACGca -5'
27998 3' -52.1 NC_005887.1 + 30462 0.66 0.788023
Target:  5'- cCGGGCUgGA---ACAGGcGGUGCGc -3'
miRNA:   3'- aGCUCGAgCUuacUGUCCaUCACGCa -5'
27998 3' -52.1 NC_005887.1 + 1632 0.66 0.788023
Target:  5'- uUCGAGCUCGAG-GACGGcacgaGCGUc -3'
miRNA:   3'- -AGCUCGAGCUUaCUGUCcaucaCGCA- -5'
27998 3' -52.1 NC_005887.1 + 14693 0.66 0.777662
Target:  5'- aUCGGGCUCGucgcggcgGGCGGGccgGGcGCGg -3'
miRNA:   3'- -AGCUCGAGCuua-----CUGUCCa--UCaCGCa -5'
27998 3' -52.1 NC_005887.1 + 30888 0.67 0.767136
Target:  5'- gCGAGCUCGGucacguUGuuCGGGUAGUuccagcGCGg -3'
miRNA:   3'- aGCUCGAGCUu-----ACu-GUCCAUCA------CGCa -5'
27998 3' -52.1 NC_005887.1 + 31294 0.67 0.734703
Target:  5'- gUCGAGCUCGAccGGCAucggcgcaccGGUGGUcaCGUc -3'
miRNA:   3'- -AGCUCGAGCUuaCUGU----------CCAUCAc-GCA- -5'
27998 3' -52.1 NC_005887.1 + 40229 0.67 0.734703
Target:  5'- aCGAGCUCGAAcGGCuuGcAGUGCa- -3'
miRNA:   3'- aGCUCGAGCUUaCUGucCaUCACGca -5'
27998 3' -52.1 NC_005887.1 + 18377 0.67 0.734703
Target:  5'- cUCGcGCUCGAGcagugGGCcgAGGUcgucGGUGCGUg -3'
miRNA:   3'- -AGCuCGAGCUUa----CUG--UCCA----UCACGCA- -5'
27998 3' -52.1 NC_005887.1 + 40995 0.68 0.701259
Target:  5'- cCGAGCUCGAA-GcCuGGUAcGUGUGg -3'
miRNA:   3'- aGCUCGAGCUUaCuGuCCAU-CACGCa -5'
27998 3' -52.1 NC_005887.1 + 31130 0.71 0.541642
Target:  5'- gCGAGCUUGccgGGCAGGccGUGCGc -3'
miRNA:   3'- aGCUCGAGCuuaCUGUCCauCACGCa -5'
27998 3' -52.1 NC_005887.1 + 40732 1.08 0.001874
Target:  5'- cUCGAGCUCGAAUGACAGGUAGUGCGUu -3'
miRNA:   3'- -AGCUCGAGCUUACUGUCCAUCACGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.