Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27998 | 5' | -65.7 | NC_005887.1 | + | 5835 | 0.66 | 0.231654 |
Target: 5'- ---uGCCGCCGCCCgAUgCugCGGUCg -3' miRNA: 3'- gcucCGGCGGUGGG-UGgGugGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 19115 | 0.68 | 0.142717 |
Target: 5'- cCGAccGCCGCCGCUCGCgUGCCgucggcguGGCCCu -3' miRNA: 3'- -GCUc-CGGCGGUGGGUGgGUGG--------CCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 13365 | 0.69 | 0.128483 |
Target: 5'- -aAGGCCGCCAaaagcgaccuggUCCACUUcguCCGGCUCg -3' miRNA: 3'- gcUCCGGCGGU------------GGGUGGGu--GGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 40766 | 1.1 | 0.000063 |
Target: 5'- uCGAGGCCGCCACCCACCCACCGGCCCa -3' miRNA: 3'- -GCUCCGGCGGUGGGUGGGUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 11880 | 0.66 | 0.209693 |
Target: 5'- -cGGGCCGCgucgCGCaCCGCCUguuCCaGCCCg -3' miRNA: 3'- gcUCCGGCG----GUG-GGUGGGu--GGcCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 26238 | 0.66 | 0.209693 |
Target: 5'- gCGcGGCgcagCGCCACCgGaaagcguuucaCCACCGGCCa -3' miRNA: 3'- -GCuCCG----GCGGUGGgUg----------GGUGGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 36298 | 0.67 | 0.17558 |
Target: 5'- uGAGuGCCG-CGCCgCugCCACCaGCaCCa -3' miRNA: 3'- gCUC-CGGCgGUGG-GugGGUGGcCG-GG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 28735 | 0.67 | 0.17113 |
Target: 5'- --cGGCCGCCGCgCGCCgCGCU-GCCa -3' miRNA: 3'- gcuCCGGCGGUGgGUGG-GUGGcCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 10738 | 0.68 | 0.15797 |
Target: 5'- aGuGGCgGCCaguugaACCCGgcacauuCCCGCUGGCUCa -3' miRNA: 3'- gCuCCGgCGG------UGGGU-------GGGUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 40131 | 0.68 | 0.142717 |
Target: 5'- cCGAccGGaugCGCCAgCCGCCCAUCGGUUUg -3' miRNA: 3'- -GCU--CCg--GCGGUgGGUGGGUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 12535 | 0.68 | 0.150363 |
Target: 5'- uGGcGCCGCgcaCACCCGCagacuuccagCUACUGGCCCg -3' miRNA: 3'- gCUcCGGCG---GUGGGUG----------GGUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 19663 | 0.68 | 0.15838 |
Target: 5'- uCGAGGaaCGCaaCACgguugCGCCCACCGGCCg -3' miRNA: 3'- -GCUCCg-GCG--GUGg----GUGGGUGGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 39656 | 0.66 | 0.22824 |
Target: 5'- --cGGCCGCUugCCGCCCguacgcuucacgcgcACCaGGUgCu -3' miRNA: 3'- gcuCCGGCGGugGGUGGG---------------UGG-CCGgG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 32553 | 0.68 | 0.150363 |
Target: 5'- -cGGGCCcaaUCACCCACUCAUC-GCCCg -3' miRNA: 3'- gcUCCGGc--GGUGGGUGGGUGGcCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 25849 | 0.66 | 0.225988 |
Target: 5'- gCGAucGGCCugcgacaucGCCgACCaGCCCGCCGGaUCCu -3' miRNA: 3'- -GCU--CCGG---------CGG-UGGgUGGGUGGCC-GGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 28660 | 0.67 | 0.170252 |
Target: 5'- --uGGCCGCCcguggucgagauCCCACCCGUCGcGCCg -3' miRNA: 3'- gcuCCGGCGGu-----------GGGUGGGUGGC-CGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 29277 | 0.68 | 0.146495 |
Target: 5'- uCGAGcGCCGCguUCCACggAUCGGCCUu -3' miRNA: 3'- -GCUC-CGGCGguGGGUGggUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 28140 | 0.69 | 0.135428 |
Target: 5'- gCGcGG-CGCCGCCCugUCcgagGCCGcGCCCg -3' miRNA: 3'- -GCuCCgGCGGUGGGugGG----UGGC-CGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 8963 | 0.66 | 0.215009 |
Target: 5'- gCGAuGaGCC-UCAUCCuGCCCGCCGGCgCg -3' miRNA: 3'- -GCU-C-CGGcGGUGGG-UGGGUGGCCGgG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 5259 | 0.67 | 0.180132 |
Target: 5'- cCGAGGCUG-UGCUCGCCCGCuuCGGUgCg -3' miRNA: 3'- -GCUCCGGCgGUGGGUGGGUG--GCCGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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