Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27998 | 5' | -65.7 | NC_005887.1 | + | 1003 | 0.66 | 0.215009 |
Target: 5'- --cGGCCGCCgugcGCgCGCUguaCACCGGCUUg -3' miRNA: 3'- gcuCCGGCGG----UGgGUGG---GUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 26928 | 0.69 | 0.131913 |
Target: 5'- --uGGCCGCCGUCgacgaACCCuGCUGGCCCc -3' miRNA: 3'- gcuCCGGCGGUGGg----UGGG-UGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 34648 | 0.7 | 0.118681 |
Target: 5'- aCGAGGCgCGCCGgCUugCCGguuuCCGGaUCCg -3' miRNA: 3'- -GCUCCG-GCGGUgGGugGGU----GGCC-GGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 25088 | 0.71 | 0.093306 |
Target: 5'- uGAGGCCGCCGCCgucggauuuCGCgaCCGguuguCCGGCCg -3' miRNA: 3'- gCUCCGGCGGUGG---------GUG--GGU-----GGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 35736 | 0.71 | 0.093306 |
Target: 5'- uCGcGGUCGUgGCCCACUCGCuCGGCUUc -3' miRNA: 3'- -GCuCCGGCGgUGGGUGGGUG-GCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 5502 | 0.71 | 0.090827 |
Target: 5'- --cGGCCGCagCACCgGCCgcagCACCGGCCg -3' miRNA: 3'- gcuCCGGCG--GUGGgUGG----GUGGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 5429 | 0.71 | 0.08841 |
Target: 5'- gCGAccGGCgCGaCCACgCCGCCCGCUGGCaCUc -3' miRNA: 3'- -GCU--CCG-GC-GGUG-GGUGGGUGGCCG-GG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 539 | 0.71 | 0.083759 |
Target: 5'- --cGGCCGCCGCgCGCCgCGCCGGauaCa -3' miRNA: 3'- gcuCCGGCGGUGgGUGG-GUGGCCgg-G- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 38305 | 0.69 | 0.135428 |
Target: 5'- aGGGuGCCGUCGCCguUgucgaUCACCGGCUCa -3' miRNA: 3'- gCUC-CGGCGGUGGguG-----GGUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 41973 | 0.68 | 0.142717 |
Target: 5'- gCGcGGCgCGCuCGCCUAUcagcagcacggCCugCGGCCCa -3' miRNA: 3'- -GCuCCG-GCG-GUGGGUG-----------GGugGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 16512 | 0.66 | 0.215009 |
Target: 5'- uCGcAGGCCGaUCGCgUCG-CCGCCGGCgCCg -3' miRNA: 3'- -GC-UCCGGC-GGUG-GGUgGGUGGCCG-GG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 41472 | 0.66 | 0.209693 |
Target: 5'- gCGAGGauCUGCUcaucauCCCGCauggCACCGGCUCg -3' miRNA: 3'- -GCUCC--GGCGGu-----GGGUGg---GUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 34149 | 0.66 | 0.204491 |
Target: 5'- aGAgGGCCGaCUugCCagaGCCgACaGGCCCg -3' miRNA: 3'- gCU-CCGGC-GGugGG---UGGgUGgCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 40039 | 0.67 | 0.184789 |
Target: 5'- uCGAGGCgGCCgGCCUacGCCCgauACCGuuCCg -3' miRNA: 3'- -GCUCCGgCGG-UGGG--UGGG---UGGCcgGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 31772 | 0.67 | 0.184789 |
Target: 5'- uCGucGgaGUCGCCCACCCugCGaGCCa -3' miRNA: 3'- -GCucCggCGGUGGGUGGGugGC-CGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 23433 | 0.67 | 0.184789 |
Target: 5'- uCGucGCaGCCGCCCGccauCCCGCCGcuuccaccggaaGCCCg -3' miRNA: 3'- -GCucCGgCGGUGGGU----GGGUGGC------------CGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 21314 | 0.67 | 0.184789 |
Target: 5'- -cGGGCaCGCCcaccgcGCCgACCgCAUCGGCCg -3' miRNA: 3'- gcUCCG-GCGG------UGGgUGG-GUGGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 25021 | 0.67 | 0.17113 |
Target: 5'- --cGGCgGCCGCCgGCCaGCCGGUa- -3' miRNA: 3'- gcuCCGgCGGUGGgUGGgUGGCCGgg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 1796 | 0.68 | 0.162532 |
Target: 5'- --cGGCCGCUACCCGaaggacgugCCGCCGaCCUg -3' miRNA: 3'- gcuCCGGCGGUGGGUg--------GGUGGCcGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 4294 | 0.68 | 0.150363 |
Target: 5'- gCGAGGUCGaCAUCCucGCCgagGCCGGCCa -3' miRNA: 3'- -GCUCCGGCgGUGGG--UGGg--UGGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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