miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27999 5' -57 NC_005887.1 + 14648 0.66 0.550774
Target:  5'- -gCCGGCGCGgugcugCccGUCGCCGGu-- -3'
miRNA:   3'- caGGCCGCGCaa----GcaCAGCGGCUucu -5'
27999 5' -57 NC_005887.1 + 16320 0.66 0.550774
Target:  5'- -gCCGGCcUGUUCGagGUCGCCGc-GAa -3'
miRNA:   3'- caGGCCGcGCAAGCa-CAGCGGCuuCU- -5'
27999 5' -57 NC_005887.1 + 24777 0.67 0.529405
Target:  5'- -aCgGGCGUGUUCGUcgCGCCGGu-- -3'
miRNA:   3'- caGgCCGCGCAAGCAcaGCGGCUucu -5'
27999 5' -57 NC_005887.1 + 14539 0.67 0.487652
Target:  5'- cGUCggCGGCGCGUcgaUCGgcaUGUCGCgCGcGGAa -3'
miRNA:   3'- -CAG--GCCGCGCA---AGC---ACAGCG-GCuUCU- -5'
27999 5' -57 NC_005887.1 + 34831 0.67 0.477453
Target:  5'- cGUUCaGCGUGacgcucggggUCGUGcCGCCGAGGGu -3'
miRNA:   3'- -CAGGcCGCGCa---------AGCACaGCGGCUUCU- -5'
27999 5' -57 NC_005887.1 + 15558 0.68 0.471385
Target:  5'- -cUCGGCGCGcgcgaccgcgcucgaUUCGcUGaUCGCCGAAGc -3'
miRNA:   3'- caGGCCGCGC---------------AAGC-AC-AGCGGCUUCu -5'
27999 5' -57 NC_005887.1 + 9662 0.68 0.447516
Target:  5'- aUCCGuGCGCuGUaCGcgGUUGCCGAAGc -3'
miRNA:   3'- cAGGC-CGCG-CAaGCa-CAGCGGCUUCu -5'
27999 5' -57 NC_005887.1 + 4908 0.69 0.400046
Target:  5'- -gCCGGCGCGaggugUUCGUG-CGCCuGAuccAGAu -3'
miRNA:   3'- caGGCCGCGC-----AAGCACaGCGG-CU---UCU- -5'
27999 5' -57 NC_005887.1 + 36167 0.7 0.350855
Target:  5'- cGUCgCGGCGCGUcacCGUGcCgaccgggaucaccguGCCGAGGAa -3'
miRNA:   3'- -CAG-GCCGCGCAa--GCACaG---------------CGGCUUCU- -5'
27999 5' -57 NC_005887.1 + 15059 0.7 0.331129
Target:  5'- aUUCGGgGCag--GUGUCGCCGAAGGg -3'
miRNA:   3'- cAGGCCgCGcaagCACAGCGGCUUCU- -5'
27999 5' -57 NC_005887.1 + 36129 0.71 0.307637
Target:  5'- cGUCCGGCGUGgcucggugaUCGUcUCGCCGGu-- -3'
miRNA:   3'- -CAGGCCGCGCa--------AGCAcAGCGGCUucu -5'
27999 5' -57 NC_005887.1 + 24472 0.71 0.300094
Target:  5'- -gUUGGCGCGgccgaUCGUGUCGUCGAu-- -3'
miRNA:   3'- caGGCCGCGCa----AGCACAGCGGCUucu -5'
27999 5' -57 NC_005887.1 + 30271 0.71 0.292695
Target:  5'- cGUCCGGCGCGacgaUCGUGccgCGCaCGAc-- -3'
miRNA:   3'- -CAGGCCGCGCa---AGCACa--GCG-GCUucu -5'
27999 5' -57 NC_005887.1 + 36554 0.71 0.28544
Target:  5'- uUCCGGCagGCGUUCGUG-CGCCu---- -3'
miRNA:   3'- cAGGCCG--CGCAAGCACaGCGGcuucu -5'
27999 5' -57 NC_005887.1 + 40512 1.08 0.000592
Target:  5'- aGUCCGGCGCGUUCGUGUCGCCGAAGAu -3'
miRNA:   3'- -CAGGCCGCGCAAGCACAGCGGCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.