Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2800 | 3' | -64.7 | NC_001491.2 | + | 114562 | 0.68 | 0.379443 |
Target: 5'- cGGCcgGCGCGGCGCuGG-GG-CCGUGGAg -3' miRNA: 3'- -UCG--CGUGCCGCGuCCgCUgGGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 138752 | 0.69 | 0.370942 |
Target: 5'- uGCGCGCGGCuGCGGGgcugccUGGCCCcucugggGUGGGg -3' miRNA: 3'- uCGCGUGCCG-CGUCC------GCUGGG-------CGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 71033 | 0.69 | 0.364083 |
Target: 5'- cGGCGUugaaGGUGCGcGCGGCCCGCuccagGGAg -3' miRNA: 3'- -UCGCGug--CCGCGUcCGCUGGGCG-----CCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 86929 | 0.69 | 0.356566 |
Target: 5'- cGGCGCacuugGCGGUGUGGGUGAgCUuggGCGGGg -3' miRNA: 3'- -UCGCG-----UGCCGCGUCCGCUgGG---CGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 139706 | 0.69 | 0.356566 |
Target: 5'- cGC-CGCGGCGUAccuGCGcGCCCGCGGc -3' miRNA: 3'- uCGcGUGCCGCGUc--CGC-UGGGCGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 50163 | 0.69 | 0.356566 |
Target: 5'- -aCGCAuuCGGCGCAGGUucuUCCGCGGc -3' miRNA: 3'- ucGCGU--GCCGCGUCCGcu-GGGCGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 137712 | 0.69 | 0.341862 |
Target: 5'- gGGCgGgGCGGCGUcgcGGCGGCggCCGUGGAc -3' miRNA: 3'- -UCG-CgUGCCGCGu--CCGCUG--GGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 145377 | 0.7 | 0.327601 |
Target: 5'- cGGCGCcggaGCGGCagcucuucggGguGGCGGCCCcaGCGGc -3' miRNA: 3'- -UCGCG----UGCCG----------CguCCGCUGGG--CGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 138017 | 0.7 | 0.3269 |
Target: 5'- cGGUGC-CGGCGguGGCGGCUgucaucaUGuCGGAg -3' miRNA: 3'- -UCGCGuGCCGCguCCGCUGG-------GC-GCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 80553 | 0.72 | 0.245698 |
Target: 5'- uGCGCauuuccugaguuACGGCGguGGCGGuuCCCGCGu- -3' miRNA: 3'- uCGCG------------UGCCGCguCCGCU--GGGCGCcu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 121636 | 0.72 | 0.219028 |
Target: 5'- gGGCcagGUACgGGCGCAGG--GCCCGCGGGg -3' miRNA: 3'- -UCG---CGUG-CCGCGUCCgcUGGGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 123139 | 0.74 | 0.177254 |
Target: 5'- -aCGCGCGGCcaggccuccGCGGGCGGCCCGgcgccgcucCGGAg -3' miRNA: 3'- ucGCGUGCCG---------CGUCCGCUGGGC---------GCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 13931 | 0.74 | 0.168987 |
Target: 5'- uAGCGCGcCGGgGCuGGCGGCCUuggGCGGu -3' miRNA: 3'- -UCGCGU-GCCgCGuCCGCUGGG---CGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 137742 | 0.76 | 0.129428 |
Target: 5'- cGGCGgGCGGCG--GGCG-CCCGCGGGu -3' miRNA: 3'- -UCGCgUGCCGCguCCGCuGGGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 140105 | 0.81 | 0.05371 |
Target: 5'- cGCGCuccggaGCGGCGcCGGGCcGCCCGCGGAg -3' miRNA: 3'- uCGCG------UGCCGC-GUCCGcUGGGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 148264 | 1.08 | 0.000599 |
Target: 5'- cAGCGCACGGCGCAGGCGACCCGCGGAg -3' miRNA: 3'- -UCGCGUGCCGCGUCCGCUGGGCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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