Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2800 | 3' | -64.7 | NC_001491.2 | + | 13931 | 0.74 | 0.168987 |
Target: 5'- uAGCGCGcCGGgGCuGGCGGCCUuggGCGGu -3' miRNA: 3'- -UCGCGU-GCCgCGuCCGCUGGG---CGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 46049 | 0.68 | 0.411437 |
Target: 5'- uGGCGguCGGaaugucCGCGGGCG-CCUGCGaGGg -3' miRNA: 3'- -UCGCguGCC------GCGUCCGCuGGGCGC-CU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 50163 | 0.69 | 0.356566 |
Target: 5'- -aCGCAuuCGGCGCAGGUucuUCCGCGGc -3' miRNA: 3'- ucGCGU--GCCGCGUCCGcu-GGGCGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 51165 | 0.68 | 0.40898 |
Target: 5'- --aGCGCGGCGCggucugcgcgauggAGGCGagGCUCGcCGGAa -3' miRNA: 3'- ucgCGUGCCGCG--------------UCCGC--UGGGC-GCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 57515 | 0.66 | 0.525814 |
Target: 5'- cGCGU-CGGC-CAGGCc-CUCGCGGAu -3' miRNA: 3'- uCGCGuGCCGcGUCCGcuGGGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 68562 | 0.66 | 0.525814 |
Target: 5'- gAGC-CGCGcCGCGGGCGGCUCaaaCGGGg -3' miRNA: 3'- -UCGcGUGCcGCGUCCGCUGGGc--GCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 71033 | 0.69 | 0.364083 |
Target: 5'- cGGCGUugaaGGUGCGcGCGGCCCGCuccagGGAg -3' miRNA: 3'- -UCGCGug--CCGCGUcCGCUGGGCG-----CCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 80553 | 0.72 | 0.245698 |
Target: 5'- uGCGCauuuccugaguuACGGCGguGGCGGuuCCCGCGu- -3' miRNA: 3'- uCGCG------------UGCCGCguCCGCU--GGGCGCcu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 80935 | 0.66 | 0.516539 |
Target: 5'- uGGCGCacaACGGUaaAGGCGAaCCCuggGUGGAa -3' miRNA: 3'- -UCGCG---UGCCGcgUCCGCU-GGG---CGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 85442 | 0.67 | 0.461546 |
Target: 5'- cGCGCAugagaguCGGaCGCGuGUGcCCCGCGGGc -3' miRNA: 3'- uCGCGU-------GCC-GCGUcCGCuGGGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 86929 | 0.69 | 0.356566 |
Target: 5'- cGGCGCacuugGCGGUGUGGGUGAgCUuggGCGGGg -3' miRNA: 3'- -UCGCG-----UGCCGCGUCCGCUgGG---CGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 97358 | 0.68 | 0.395231 |
Target: 5'- cGGUcuGCGCGGCGCuGGCaacGCgCGCGGu -3' miRNA: 3'- -UCG--CGUGCCGCGuCCGc--UGgGCGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 114562 | 0.68 | 0.379443 |
Target: 5'- cGGCcgGCGCGGCGCuGG-GG-CCGUGGAg -3' miRNA: 3'- -UCG--CGUGCCGCGuCCgCUgGGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 114639 | 0.67 | 0.462423 |
Target: 5'- gAGgGCGCcGCGCAGaGCcACCgCGCGGc -3' miRNA: 3'- -UCgCGUGcCGCGUC-CGcUGG-GCGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 114771 | 0.66 | 0.53515 |
Target: 5'- cGCGC-CGGCGa--GCGcACCCGCGu- -3' miRNA: 3'- uCGCGuGCCGCgucCGC-UGGGCGCcu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 115251 | 0.67 | 0.44505 |
Target: 5'- gGGgGacucuCGGCGCugcuGGCGGCCCuGgGGAa -3' miRNA: 3'- -UCgCgu---GCCGCGu---CCGCUGGG-CgCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 115446 | 0.67 | 0.462423 |
Target: 5'- cGGCGCGCGcuucggggaGCuGGCGGCCaGCGGc -3' miRNA: 3'- -UCGCGUGCcg-------CGuCCGCUGGgCGCCu -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 121636 | 0.72 | 0.219028 |
Target: 5'- gGGCcagGUACgGGCGCAGG--GCCCGCGGGg -3' miRNA: 3'- -UCG---CGUG-CCGCGUCCgcUGGGCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 122234 | 0.67 | 0.480146 |
Target: 5'- uGGCGCuuGCGGCGCuuuuuGGCagcGCUagCGCGGGu -3' miRNA: 3'- -UCGCG--UGCCGCGu----CCGc--UGG--GCGCCU- -5' |
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2800 | 3' | -64.7 | NC_001491.2 | + | 123139 | 0.74 | 0.177254 |
Target: 5'- -aCGCGCGGCcaggccuccGCGGGCGGCCCGgcgccgcucCGGAg -3' miRNA: 3'- ucGCGUGCCG---------CGUCCGCUGGGC---------GCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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