miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2800 3' -64.7 NC_001491.2 + 148264 1.08 0.000599
Target:  5'- cAGCGCACGGCGCAGGCGACCCGCGGAg -3'
miRNA:   3'- -UCGCGUGCCGCGUCCGCUGGGCGCCU- -5'
2800 3' -64.7 NC_001491.2 + 146822 0.68 0.403282
Target:  5'- cGCGCACcGCG-AGGCGcaGCUCGuCGGAg -3'
miRNA:   3'- uCGCGUGcCGCgUCCGC--UGGGC-GCCU- -5'
2800 3' -64.7 NC_001491.2 + 146396 0.66 0.489131
Target:  5'- uGGC-CGCGGCaGC-GGCGGCCUGggcCGGGu -3'
miRNA:   3'- -UCGcGUGCCG-CGuCCGCUGGGC---GCCU- -5'
2800 3' -64.7 NC_001491.2 + 145951 0.66 0.525814
Target:  5'- uGCGCcuCGGCGUagcgcgAGGCGGCCa--GGAc -3'
miRNA:   3'- uCGCGu-GCCGCG------UCCGCUGGgcgCCU- -5'
2800 3' -64.7 NC_001491.2 + 145377 0.7 0.327601
Target:  5'- cGGCGCcggaGCGGCagcucuucggGguGGCGGCCCcaGCGGc -3'
miRNA:   3'- -UCGCG----UGCCG----------CguCCGCUGGG--CGCCu -5'
2800 3' -64.7 NC_001491.2 + 144497 0.67 0.480146
Target:  5'- uGGCGggUGGcCGguGGCGGgguUCCGCGGc -3'
miRNA:   3'- -UCGCguGCC-GCguCCGCU---GGGCGCCu -5'
2800 3' -64.7 NC_001491.2 + 140105 0.81 0.05371
Target:  5'- cGCGCuccggaGCGGCGcCGGGCcGCCCGCGGAg -3'
miRNA:   3'- uCGCG------UGCCGC-GUCCGcUGGGCGCCU- -5'
2800 3' -64.7 NC_001491.2 + 139840 0.68 0.418863
Target:  5'- gAGCGCGCGuGUGCGcGGUuuuucgaGACCCGgcuCGGGa -3'
miRNA:   3'- -UCGCGUGC-CGCGU-CCG-------CUGGGC---GCCU- -5'
2800 3' -64.7 NC_001491.2 + 139706 0.69 0.356566
Target:  5'- cGC-CGCGGCGUAccuGCGcGCCCGCGGc -3'
miRNA:   3'- uCGcGUGCCGCGUc--CGC-UGGGCGCCu -5'
2800 3' -64.7 NC_001491.2 + 139498 0.67 0.471242
Target:  5'- gAGCG---GGCGUGGG-GACCCGgGGAg -3'
miRNA:   3'- -UCGCgugCCGCGUCCgCUGGGCgCCU- -5'
2800 3' -64.7 NC_001491.2 + 138752 0.69 0.370942
Target:  5'- uGCGCGCGGCuGCGGGgcugccUGGCCCcucugggGUGGGg -3'
miRNA:   3'- uCGCGUGCCG-CGUCC------GCUGGG-------CGCCU- -5'
2800 3' -64.7 NC_001491.2 + 138017 0.7 0.3269
Target:  5'- cGGUGC-CGGCGguGGCGGCUgucaucaUGuCGGAg -3'
miRNA:   3'- -UCGCGuGCCGCguCCGCUGG-------GC-GCCU- -5'
2800 3' -64.7 NC_001491.2 + 137742 0.76 0.129428
Target:  5'- cGGCGgGCGGCG--GGCG-CCCGCGGGu -3'
miRNA:   3'- -UCGCgUGCCGCguCCGCuGGGCGCCU- -5'
2800 3' -64.7 NC_001491.2 + 137712 0.69 0.341862
Target:  5'- gGGCgGgGCGGCGUcgcGGCGGCggCCGUGGAc -3'
miRNA:   3'- -UCG-CgUGCCGCGu--CCGCUG--GGCGCCU- -5'
2800 3' -64.7 NC_001491.2 + 125557 0.66 0.53515
Target:  5'- cGCGCcccgagGCGGCGCucGCGcgcuCCCGCGc- -3'
miRNA:   3'- uCGCG------UGCCGCGucCGCu---GGGCGCcu -5'
2800 3' -64.7 NC_001491.2 + 123526 0.68 0.386495
Target:  5'- gAGCuuGCGGcCGCGGGCGcgcagguACgCCGCGGc -3'
miRNA:   3'- -UCGcgUGCC-GCGUCCGC-------UG-GGCGCCu -5'
2800 3' -64.7 NC_001491.2 + 123139 0.74 0.177254
Target:  5'- -aCGCGCGGCcaggccuccGCGGGCGGCCCGgcgccgcucCGGAg -3'
miRNA:   3'- ucGCGUGCCG---------CGUCCGCUGGGC---------GCCU- -5'
2800 3' -64.7 NC_001491.2 + 122234 0.67 0.480146
Target:  5'- uGGCGCuuGCGGCGCuuuuuGGCagcGCUagCGCGGGu -3'
miRNA:   3'- -UCGCG--UGCCGCGu----CCGc--UGG--GCGCCU- -5'
2800 3' -64.7 NC_001491.2 + 121636 0.72 0.219028
Target:  5'- gGGCcagGUACgGGCGCAGG--GCCCGCGGGg -3'
miRNA:   3'- -UCG---CGUG-CCGCGUCCgcUGGGCGCCU- -5'
2800 3' -64.7 NC_001491.2 + 115446 0.67 0.462423
Target:  5'- cGGCGCGCGcuucggggaGCuGGCGGCCaGCGGc -3'
miRNA:   3'- -UCGCGUGCcg-------CGuCCGCUGGgCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.