miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2800 5' -53.3 NC_001491.2 + 130608 0.66 0.971451
Target:  5'- uGCCCuGCGUGUuuuugagcguuGGcgGUGGUG-UGGUc -3'
miRNA:   3'- cCGGG-CGUACA-----------UCuaCACCAUgACCG- -5'
2800 5' -53.3 NC_001491.2 + 123706 0.66 0.96847
Target:  5'- cGCCCGCucgaUAGuUGaGGUAUUGGUg -3'
miRNA:   3'- cCGGGCGuac-AUCuACaCCAUGACCG- -5'
2800 5' -53.3 NC_001491.2 + 34648 0.66 0.961856
Target:  5'- cGGCCCGC-UGUug--GcGGUGCUucgcaGGCg -3'
miRNA:   3'- -CCGGGCGuACAucuaCaCCAUGA-----CCG- -5'
2800 5' -53.3 NC_001491.2 + 128323 0.68 0.931352
Target:  5'- cGGCaCGC----GGGUGUGG-GCUGGCg -3'
miRNA:   3'- -CCGgGCGuacaUCUACACCaUGACCG- -5'
2800 5' -53.3 NC_001491.2 + 78145 0.68 0.931352
Target:  5'- uGCUCGaugugcuucauCAUGUAGGUGUGGgug-GGCu -3'
miRNA:   3'- cCGGGC-----------GUACAUCUACACCaugaCCG- -5'
2800 5' -53.3 NC_001491.2 + 64828 0.69 0.87381
Target:  5'- -cCCCGCuugucuguuggGUGUAGGUGUGGUcuaaacacucaguAgUGGCu -3'
miRNA:   3'- ccGGGCG-----------UACAUCUACACCA-------------UgACCG- -5'
2800 5' -53.3 NC_001491.2 + 148518 0.7 0.86246
Target:  5'- gGGCCCGCAUGUccuugcAGccGUcGUagucgggcaggacgcGCUGGCg -3'
miRNA:   3'- -CCGGGCGUACA------UCuaCAcCA---------------UGACCG- -5'
2800 5' -53.3 NC_001491.2 + 34550 0.7 0.843301
Target:  5'- gGGCUuccaCGacuuGUGUGGGUGUuGUGCUGGCc -3'
miRNA:   3'- -CCGG----GCg---UACAUCUACAcCAUGACCG- -5'
2800 5' -53.3 NC_001491.2 + 114305 0.75 0.588224
Target:  5'- gGGCCgGCGUGUGGAgcugGUGGU--UGaGCa -3'
miRNA:   3'- -CCGGgCGUACAUCUa---CACCAugAC-CG- -5'
2800 5' -53.3 NC_001491.2 + 148230 1.1 0.004554
Target:  5'- cGCCCGCAUGUAGAUGUGGUACUGGCu -3'
miRNA:   3'- cCGGGCGUACAUCUACACCAUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.