miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28000 3' -57.2 NC_005887.1 + 29498 0.66 0.541698
Target:  5'- --cGUAGCCGGCggccucgaCGGCGGGcgcgUUGUaGAa -3'
miRNA:   3'- cauCAUCGGCCG--------GCCGUCC----AACAgCU- -5'
28000 3' -57.2 NC_005887.1 + 13394 0.66 0.530917
Target:  5'- ----aGGCCGGCgCGGCGGac-GUCGGc -3'
miRNA:   3'- caucaUCGGCCG-GCCGUCcaaCAGCU- -5'
28000 3' -57.2 NC_005887.1 + 34960 0.66 0.509599
Target:  5'- ----cGGCgGGCgUGcGCAGGUUGUUGAu -3'
miRNA:   3'- caucaUCGgCCG-GC-CGUCCAACAGCU- -5'
28000 3' -57.2 NC_005887.1 + 26335 0.66 0.499075
Target:  5'- --cGUGGCCGGCgcUGGCcGGGUgcgCGAa -3'
miRNA:   3'- cauCAUCGGCCG--GCCG-UCCAacaGCU- -5'
28000 3' -57.2 NC_005887.1 + 23572 0.67 0.478326
Target:  5'- -----cGCCGGCCGGCAG--UG-CGAa -3'
miRNA:   3'- caucauCGGCCGGCCGUCcaACaGCU- -5'
28000 3' -57.2 NC_005887.1 + 17676 0.67 0.478326
Target:  5'- -gAGgauGCCGGCCgcGGCuGGacaaUGUCGAa -3'
miRNA:   3'- caUCau-CGGCCGG--CCGuCCa---ACAGCU- -5'
28000 3' -57.2 NC_005887.1 + 12152 0.67 0.478326
Target:  5'- cGgcGUGGCUGGCCGGCGaGaaGUgGAa -3'
miRNA:   3'- -CauCAUCGGCCGGCCGUcCaaCAgCU- -5'
28000 3' -57.2 NC_005887.1 + 24915 0.69 0.346909
Target:  5'- -cAGcAGCCGGaUCGGCAccGUUGUCGAu -3'
miRNA:   3'- caUCaUCGGCC-GGCCGUc-CAACAGCU- -5'
28000 3' -57.2 NC_005887.1 + 26216 0.69 0.330367
Target:  5'- -cGGUGGuuGGCgGGguGGUUGcgcgCGGc -3'
miRNA:   3'- caUCAUCggCCGgCCguCCAACa---GCU- -5'
28000 3' -57.2 NC_005887.1 + 40568 0.7 0.284273
Target:  5'- -gGGUAG-CGGCCGacgcGCAGGUcgagcaUGUCGAg -3'
miRNA:   3'- caUCAUCgGCCGGC----CGUCCA------ACAGCU- -5'
28000 3' -57.2 NC_005887.1 + 38046 0.73 0.186266
Target:  5'- -cAGcUGGCCGGCCucGGCgAGGaUGUCGAc -3'
miRNA:   3'- caUC-AUCGGCCGG--CCG-UCCaACAGCU- -5'
28000 3' -57.2 NC_005887.1 + 31682 0.74 0.171582
Target:  5'- ---uUAGCCGGgCCGGCuGGUUcGUCGGc -3'
miRNA:   3'- caucAUCGGCC-GGCCGuCCAA-CAGCU- -5'
28000 3' -57.2 NC_005887.1 + 40362 1.09 0.000457
Target:  5'- cGUAGUAGCCGGCCGGCAGGUUGUCGAu -3'
miRNA:   3'- -CAUCAUCGGCCGGCCGUCCAACAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.