miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28000 5' -55.7 NC_005887.1 + 269 0.67 0.539773
Target:  5'- -aUCGCGcCCCACgCGAcagCGCuCGUCGa -3'
miRNA:   3'- caAGUGCuGGGUG-GCUa--GCG-GCAGUg -5'
28000 5' -55.7 NC_005887.1 + 574 0.68 0.496136
Target:  5'- --aCGCGACCCACgucggcacgaccuCGAUCGUgGUCu- -3'
miRNA:   3'- caaGUGCUGGGUG-------------GCUAGCGgCAGug -5'
28000 5' -55.7 NC_005887.1 + 740 0.7 0.398266
Target:  5'- -cUCACgGGCCgCGCCGGcCGCCG-CACc -3'
miRNA:   3'- caAGUG-CUGG-GUGGCUaGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 809 0.72 0.297573
Target:  5'- cUUCGCGugCgCGCCGAgCGCC-UCGCg -3'
miRNA:   3'- cAAGUGCugG-GUGGCUaGCGGcAGUG- -5'
28000 5' -55.7 NC_005887.1 + 2937 0.69 0.446199
Target:  5'- aUUCGCGAgaUGCCGAaCGCgGUCGCg -3'
miRNA:   3'- cAAGUGCUggGUGGCUaGCGgCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 3236 0.66 0.650207
Target:  5'- uGUUCGauuCGACCgCGCCGcUCGCgcugcgcaacuuCGUCGCc -3'
miRNA:   3'- -CAAGU---GCUGG-GUGGCuAGCG------------GCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 4886 0.68 0.518304
Target:  5'- -cUCGCGACgauggUCGCCGAggGCCGgCGCg -3'
miRNA:   3'- caAGUGCUG-----GGUGGCUagCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 5240 0.69 0.466255
Target:  5'- ---gGCGACggCCGCgCGAUCGCCGagGCu -3'
miRNA:   3'- caagUGCUG--GGUG-GCUAGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 5380 0.66 0.62794
Target:  5'- --gCuCGACCCGCgCGA-CGCCGagACg -3'
miRNA:   3'- caaGuGCUGGGUG-GCUaGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 5436 0.67 0.539773
Target:  5'- --gCGCGACCaCGCCGccCGCUGgCACu -3'
miRNA:   3'- caaGUGCUGG-GUGGCuaGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 5507 0.66 0.650207
Target:  5'- -gUCGCGAUCCAgCGcAagGCUGUCGa -3'
miRNA:   3'- caAGUGCUGGGUgGC-UagCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 6535 0.66 0.604577
Target:  5'- -aUCGCc-CCCGCCGAauucacggggcugUCGCCG-CGCu -3'
miRNA:   3'- caAGUGcuGGGUGGCU-------------AGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 7389 0.66 0.594592
Target:  5'- cGUUCA--GCUCGCCGAcgacgaUCGCCacgGUCGCa -3'
miRNA:   3'- -CAAGUgcUGGGUGGCU------AGCGG---CAGUG- -5'
28000 5' -55.7 NC_005887.1 + 7499 0.66 0.639077
Target:  5'- --cCGCGAUCaagUCGGUUGCCGUCGa -3'
miRNA:   3'- caaGUGCUGGgu-GGCUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 8085 0.69 0.463216
Target:  5'- cGUUCACGaaagcgcgcgcgcaGCUCGCCGcgcUCGCCGagGCg -3'
miRNA:   3'- -CAAGUGC--------------UGGGUGGCu--AGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 8404 0.71 0.345294
Target:  5'- --aCGCGacguGCUCGCCGAgCGCCGUCGg -3'
miRNA:   3'- caaGUGC----UGGGUGGCUaGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 8927 0.75 0.180215
Target:  5'- cGUUCGCGAUCCGCgCGAcgcagagCGCCGaCACg -3'
miRNA:   3'- -CAAGUGCUGGGUG-GCUa------GCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 9844 0.69 0.466255
Target:  5'- --gCGCGGCCaaccugaaCGCCGcgCGCCG-CACa -3'
miRNA:   3'- caaGUGCUGG--------GUGGCuaGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 11113 0.67 0.561535
Target:  5'- gGUgcgCGCGaaGCUgGCCGAggCGCCGUgGCg -3'
miRNA:   3'- -CAa--GUGC--UGGgUGGCUa-GCGGCAgUG- -5'
28000 5' -55.7 NC_005887.1 + 12961 0.68 0.486767
Target:  5'- -aUCGCGACCgCGCCGcAUgggccgagggcaUGCCGcUCGCg -3'
miRNA:   3'- caAGUGCUGG-GUGGC-UA------------GCGGC-AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.