Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 14672 | 0.66 | 0.594592 |
Target: 5'- gGUUCgACGcugcCCCGCaCGAUCGggcUCGUCGCg -3' miRNA: 3'- -CAAG-UGCu---GGGUG-GCUAGC---GGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 21309 | 0.68 | 0.507697 |
Target: 5'- aUUCACGggcacGCCCACCG--CGCCGacCGCa -3' miRNA: 3'- cAAGUGC-----UGGGUGGCuaGCGGCa-GUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 4886 | 0.68 | 0.518304 |
Target: 5'- -cUCGCGACgauggUCGCCGAggGCCGgCGCg -3' miRNA: 3'- caAGUGCUG-----GGUGGCUagCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 5436 | 0.67 | 0.539773 |
Target: 5'- --gCGCGACCaCGCCGccCGCUGgCACu -3' miRNA: 3'- caaGUGCUGG-GUGGCuaGCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 42005 | 0.67 | 0.539773 |
Target: 5'- ---uGCGGCCCACguCGAgugUCGCCGcggCGCg -3' miRNA: 3'- caagUGCUGGGUG--GCU---AGCGGCa--GUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 34870 | 0.67 | 0.539773 |
Target: 5'- -aUCGCGGCCU--CGAUCGCCuuGUCGu -3' miRNA: 3'- caAGUGCUGGGugGCUAGCGG--CAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 11113 | 0.67 | 0.561535 |
Target: 5'- gGUgcgCGCGaaGCUgGCCGAggCGCCGUgGCg -3' miRNA: 3'- -CAa--GUGC--UGGgUGGCUa-GCGGCAgUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 22422 | 0.67 | 0.583529 |
Target: 5'- -cUCGuCGugCUGCUguucugcaugugGAUUGCCGUCACg -3' miRNA: 3'- caAGU-GCugGGUGG------------CUAGCGGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 34469 | 0.67 | 0.583529 |
Target: 5'- cGUUCgcGCGGCUCGcgcCCGAgaaGCUGUCGCc -3' miRNA: 3'- -CAAG--UGCUGGGU---GGCUag-CGGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 18238 | 0.68 | 0.507697 |
Target: 5'- -aUCGCcucGGCCaCGCCGggCaCCGUCACg -3' miRNA: 3'- caAGUG---CUGG-GUGGCuaGcGGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 15566 | 0.68 | 0.476456 |
Target: 5'- --gCGCGACCgcgcucgauuCGCUGAUCGCCGaaGCu -3' miRNA: 3'- caaGUGCUGG----------GUGGCUAGCGGCagUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 37747 | 0.69 | 0.466255 |
Target: 5'- aGUUcCACGAgCCCGCCcaacUUGCCGUCGu -3' miRNA: 3'- -CAA-GUGCU-GGGUGGcu--AGCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 29621 | 0.73 | 0.275698 |
Target: 5'- gGUUCACG-CCCauauaGCUGAucUCGCCGUCGu -3' miRNA: 3'- -CAAGUGCuGGG-----UGGCU--AGCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 22220 | 0.71 | 0.328797 |
Target: 5'- -aUUACGgugGCCCGCUGAUCGUCGcgugguUCACg -3' miRNA: 3'- caAGUGC---UGGGUGGCUAGCGGC------AGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 40737 | 0.7 | 0.416092 |
Target: 5'- -gUCGCcGCCCGCgucgaggCGAUCGCCGUuggCGCg -3' miRNA: 3'- caAGUGcUGGGUG-------GCUAGCGGCA---GUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 13880 | 0.7 | 0.417044 |
Target: 5'- aGUUCGCGAgCUACCGGcUCGUgcgCGUCGg -3' miRNA: 3'- -CAAGUGCUgGGUGGCU-AGCG---GCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 39778 | 0.69 | 0.436353 |
Target: 5'- -gUCGCGGCgCUcgcGCCGAUCGUugcgcgcguCGUCACu -3' miRNA: 3'- caAGUGCUG-GG---UGGCUAGCG---------GCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 24541 | 0.69 | 0.450172 |
Target: 5'- --gCGCGGCCgcaccuucggccgggCGCCcauGAUCGCCGUCAg -3' miRNA: 3'- caaGUGCUGG---------------GUGG---CUAGCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 8085 | 0.69 | 0.463216 |
Target: 5'- cGUUCACGaaagcgcgcgcgcaGCUCGCCGcgcUCGCCGagGCg -3' miRNA: 3'- -CAAGUGC--------------UGGGUGGCu--AGCGGCagUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 9844 | 0.69 | 0.466255 |
Target: 5'- --gCGCGGCCaaccugaaCGCCGcgCGCCG-CACa -3' miRNA: 3'- caaGUGCUGG--------GUGGCuaGCGGCaGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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