miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28000 5' -55.7 NC_005887.1 + 16010 0.67 0.572507
Target:  5'- uGUUCGCGcACCCgGCCag-CGCCGgcCACg -3'
miRNA:   3'- -CAAGUGC-UGGG-UGGcuaGCGGCa-GUG- -5'
28000 5' -55.7 NC_005887.1 + 30797 0.67 0.572507
Target:  5'- --cCGCGA-CCGCCGcgCGCUG-CGCg -3'
miRNA:   3'- caaGUGCUgGGUGGCuaGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 11113 0.67 0.561535
Target:  5'- gGUgcgCGCGaaGCUgGCCGAggCGCCGUgGCg -3'
miRNA:   3'- -CAa--GUGC--UGGgUGGCUa-GCGGCAgUG- -5'
28000 5' -55.7 NC_005887.1 + 39453 0.67 0.561535
Target:  5'- cGUUCGCGG-CgGCCGAcgugucCGUCGUCGCc -3'
miRNA:   3'- -CAAGUGCUgGgUGGCUa-----GCGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 39856 0.67 0.561535
Target:  5'- --gCACGAgCagGCCGGgcUCGCCGUCGa -3'
miRNA:   3'- caaGUGCUgGg-UGGCU--AGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 33302 0.67 0.550621
Target:  5'- uGUUCACGGCCgcgaacgggcCGCCGAcaaaCGUCACg -3'
miRNA:   3'- -CAAGUGCUGG----------GUGGCUagcgGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 35079 0.67 0.550621
Target:  5'- ---gGCGGCCgggGCCGAugUCGCgGUCGCu -3'
miRNA:   3'- caagUGCUGGg--UGGCU--AGCGgCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 34743 0.67 0.549533
Target:  5'- -gUCGCcGCCCAUCGAUcaaccggCGCCGcUUACg -3'
miRNA:   3'- caAGUGcUGGGUGGCUA-------GCGGC-AGUG- -5'
28000 5' -55.7 NC_005887.1 + 34870 0.67 0.539773
Target:  5'- -aUCGCGGCCU--CGAUCGCCuuGUCGu -3'
miRNA:   3'- caAGUGCUGGGugGCUAGCGG--CAGUg -5'
28000 5' -55.7 NC_005887.1 + 5436 0.67 0.539773
Target:  5'- --gCGCGACCaCGCCGccCGCUGgCACu -3'
miRNA:   3'- caaGUGCUGG-GUGGCuaGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 42005 0.67 0.539773
Target:  5'- ---uGCGGCCCACguCGAgugUCGCCGcggCGCg -3'
miRNA:   3'- caagUGCUGGGUG--GCU---AGCGGCa--GUG- -5'
28000 5' -55.7 NC_005887.1 + 269 0.67 0.539773
Target:  5'- -aUCGCGcCCCACgCGAcagCGCuCGUCGa -3'
miRNA:   3'- caAGUGCuGGGUG-GCUa--GCG-GCAGUg -5'
28000 5' -55.7 NC_005887.1 + 24298 0.68 0.528998
Target:  5'- uGUUCACGaucGCCCaAUCG-UCGgCCGUCAg -3'
miRNA:   3'- -CAAGUGC---UGGG-UGGCuAGC-GGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 18083 0.68 0.528998
Target:  5'- -aUCGCGcuAUCCGgCGAcUCGCCGUgGCu -3'
miRNA:   3'- caAGUGC--UGGGUgGCU-AGCGGCAgUG- -5'
28000 5' -55.7 NC_005887.1 + 4886 0.68 0.518304
Target:  5'- -cUCGCGACgauggUCGCCGAggGCCGgCGCg -3'
miRNA:   3'- caAGUGCUG-----GGUGGCUagCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 18238 0.68 0.507697
Target:  5'- -aUCGCcucGGCCaCGCCGggCaCCGUCACg -3'
miRNA:   3'- caAGUG---CUGG-GUGGCuaGcGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 21309 0.68 0.507697
Target:  5'- aUUCACGggcacGCCCACCG--CGCCGacCGCa -3'
miRNA:   3'- cAAGUGC-----UGGGUGGCuaGCGGCa-GUG- -5'
28000 5' -55.7 NC_005887.1 + 574 0.68 0.496136
Target:  5'- --aCGCGACCCACgucggcacgaccuCGAUCGUgGUCu- -3'
miRNA:   3'- caaGUGCUGGGUG-------------GCUAGCGgCAGug -5'
28000 5' -55.7 NC_005887.1 + 12961 0.68 0.486767
Target:  5'- -aUCGCGACCgCGCCGcAUgggccgagggcaUGCCGcUCGCg -3'
miRNA:   3'- caAGUGCUGG-GUGGC-UA------------GCGGC-AGUG- -5'
28000 5' -55.7 NC_005887.1 + 15566 0.68 0.476456
Target:  5'- --gCGCGACCgcgcucgauuCGCUGAUCGCCGaaGCu -3'
miRNA:   3'- caaGUGCUGG----------GUGGCUAGCGGCagUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.