miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28002 5' -62.7 NC_005887.1 + 40003 1.09 0.000129
Target:  5'- cUGCGAGCGCUGGUCGCCCGCCGGAUCg -3'
miRNA:   3'- -ACGCUCGCGACCAGCGGGCGGCCUAG- -5'
28002 5' -62.7 NC_005887.1 + 36920 0.74 0.073781
Target:  5'- aGCGGGCGCgUGGUCGC--GCCGG-UCg -3'
miRNA:   3'- aCGCUCGCG-ACCAGCGggCGGCCuAG- -5'
28002 5' -62.7 NC_005887.1 + 6300 0.74 0.080248
Target:  5'- cGCGAGCGCgucgaGGccuugCGCCuCGCCGGcgCc -3'
miRNA:   3'- aCGCUCGCGa----CCa----GCGG-GCGGCCuaG- -5'
28002 5' -62.7 NC_005887.1 + 24761 0.72 0.111006
Target:  5'- cGCGAGCGCgGGauugacgggcguguUCGUCgCGCCGG-UCa -3'
miRNA:   3'- aCGCUCGCGaCC--------------AGCGG-GCGGCCuAG- -5'
28002 5' -62.7 NC_005887.1 + 8845 0.71 0.118233
Target:  5'- cGCGGGCaGCUugugaacgccGGcgCGCCCGUCGaGAUCg -3'
miRNA:   3'- aCGCUCG-CGA----------CCa-GCGGGCGGC-CUAG- -5'
28002 5' -62.7 NC_005887.1 + 4625 0.69 0.167923
Target:  5'- cGCG-GCGCcGGUgG-CCGCCGGcgCg -3'
miRNA:   3'- aCGCuCGCGaCCAgCgGGCGGCCuaG- -5'
28002 5' -62.7 NC_005887.1 + 26794 0.69 0.163515
Target:  5'- -uCGAGCGC-GGUCGCgCgCGCCGaGUCg -3'
miRNA:   3'- acGCUCGCGaCCAGCG-G-GCGGCcUAG- -5'
28002 5' -62.7 NC_005887.1 + 15317 0.69 0.167923
Target:  5'- aGCGuGCGC-GGUCGCgcgcUCGCCGaGGUUg -3'
miRNA:   3'- aCGCuCGCGaCCAGCG----GGCGGC-CUAG- -5'
28002 5' -62.7 NC_005887.1 + 26479 0.69 0.172436
Target:  5'- -cCGAGCuGCUGGUgCGCCUGCUGcGcgCg -3'
miRNA:   3'- acGCUCG-CGACCA-GCGGGCGGC-CuaG- -5'
28002 5' -62.7 NC_005887.1 + 36945 0.69 0.186633
Target:  5'- cUGCG-GCGC----CGCCCGCCGGuUCa -3'
miRNA:   3'- -ACGCuCGCGaccaGCGGGCGGCCuAG- -5'
28002 5' -62.7 NC_005887.1 + 29441 0.68 0.206621
Target:  5'- cGCGAaaccggcGUGCUGGcUCGCCgUGCC-GAUCa -3'
miRNA:   3'- aCGCU-------CGCGACC-AGCGG-GCGGcCUAG- -5'
28002 5' -62.7 NC_005887.1 + 1433 0.68 0.20185
Target:  5'- cGCGAGCuGCUGGaagGCgUuCCGGAUCa -3'
miRNA:   3'- aCGCUCG-CGACCag-CGgGcGGCCUAG- -5'
28002 5' -62.7 NC_005887.1 + 36976 0.68 0.207157
Target:  5'- gGCGucGCGCgGGUCgaGCUCGCCGGc-- -3'
miRNA:   3'- aCGCu-CGCGaCCAG--CGGGCGGCCuag -5'
28002 5' -62.7 NC_005887.1 + 12332 0.68 0.218134
Target:  5'- aGCGAacuGCGUacGUCGCUCGCCGGc-- -3'
miRNA:   3'- aCGCU---CGCGacCAGCGGGCGGCCuag -5'
28002 5' -62.7 NC_005887.1 + 25858 0.68 0.20185
Target:  5'- cUGCGAcauCGCcGaccaGCCCGCCGGAUCc -3'
miRNA:   3'- -ACGCUc--GCGaCcag-CGGGCGGCCUAG- -5'
28002 5' -62.7 NC_005887.1 + 30333 0.68 0.20185
Target:  5'- uUGCGAGCgGCgug-CGUgCGCCGGAUg -3'
miRNA:   3'- -ACGCUCG-CGaccaGCGgGCGGCCUAg -5'
28002 5' -62.7 NC_005887.1 + 23978 0.68 0.20185
Target:  5'- cGCGAGCGCcGG-CGCgCCGUcuacgCGGAagUCg -3'
miRNA:   3'- aCGCUCGCGaCCaGCG-GGCG-----GCCU--AG- -5'
28002 5' -62.7 NC_005887.1 + 17229 0.67 0.254069
Target:  5'- cUGCG-GCGCUGGaUC-UCgGCCGGAc- -3'
miRNA:   3'- -ACGCuCGCGACC-AGcGGgCGGCCUag -5'
28002 5' -62.7 NC_005887.1 + 20797 0.67 0.229603
Target:  5'- gGCGuaauuGCGCcGGUCGCCUGCaGcGUCg -3'
miRNA:   3'- aCGCu----CGCGaCCAGCGGGCGgCcUAG- -5'
28002 5' -62.7 NC_005887.1 + 41118 0.67 0.229603
Target:  5'- gUGCuGAGCGCcGcGcagCGCCCGCCaGAUa -3'
miRNA:   3'- -ACG-CUCGCGaC-Ca--GCGGGCGGcCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.